2RDB | pdb_00002rdb

X-ray Crystal Structure of Toluene/o-Xylene Monooxygenase Hydroxylase I100W Mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d2rdbc_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	TmoB-like	TmoB-like	Toluene, o-xylene monooxygenase oxygenase subunit TouB	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
B	d2rdbb_	All alpha proteins	Ferritin-like	Ferritin-like	Ribonucleotide reductase-like	Toluene, o-xylene monooxygenase oxygenase subunit TouE	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)
A	d2rdba_	All alpha proteins	Ferritin-like	Ferritin-like	Ribonucleotide reductase-like	Toluene, o-xylene monooxygenase oxygenase subunit TouA	(Stutzerimonas stutzeri ) [TaxId: 316 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	TmoB-like	8042805	3001226	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8042804	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8042803	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C		e2rdbC1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
B		e2rdbB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
A		e2rdbA1	A: Profilin-like	X: sensor domains	H: sensor domains	T: BD-FAE	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.10.20.270	Alpha Beta	Roll	Ubiquitin-like (UB roll)	TmoB-like	CATH (4.3.0)
B	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (4.3.0)
A	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Toluene, o-xylene monooxygenase oxygenase subunit;gamma	monooxygenase activity oxidoreductase activity catalytic activity	-	-
B	Toluene, o-xylene monooxygenase oxygenase subunit;beta	oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen catalytic activity	-	-
A	Toluene, o-xylene monooxygenase oxygenase subunit;alpha	monooxygenase activity oxidoreductase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR036713	TmoB-like superfamily	Homologous Superfamily
C	IPR009355	Toluene-4-monooxygenase system B	Family
B	IPR009078	Ferritin-like superfamily	Homologous Superfamily
B	IPR003430	Propane/methane/phenol/toluene hydroxylase	Family
B	IPR012078	Methane/phenol monooxygenase, hydroxylase component	Family
B	IPR012348	Ribonucleotide reductase-like	Homologous Superfamily
A	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A	IPR003430	Propane/methane/phenol/toluene hydroxylase	Family
A	IPR007029	YHS domain	Domain
A	IPR012348	Ribonucleotide reductase-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.