2P4M | pdb_00002p4m

High pH structure of Rtms5 H146S variant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2p4mh_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Montipora efflorescens ) [TaxId: 105610 ],	SCOPe (2.08)
G	d2p4mg_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Montipora efflorescens ) [TaxId: 105610 ],	SCOPe (2.08)
F	d2p4mf_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Montipora efflorescens ) [TaxId: 105610 ],	SCOPe (2.08)
E	d2p4me_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Montipora efflorescens ) [TaxId: 105610 ],	SCOPe (2.08)
D	d2p4md_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Montipora efflorescens ) [TaxId: 105610 ],	SCOPe (2.08)
C	d2p4mc_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Montipora efflorescens ) [TaxId: 105610 ],	SCOPe (2.08)
B	d2p4mb_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Montipora efflorescens ) [TaxId: 105610 ],	SCOPe (2.08)
A	d2p4ma_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Montipora efflorescens ) [TaxId: 105610 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	GFP-like	8032821	3000576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8032821	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8032821	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8032821	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8032821	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8032821	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8032821	3000576	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GFP-like	8032821	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	HTHP	e2p4mH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
G	HTHP	e2p4mG1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
F	HTHP	e2p4mF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
E	HTHP	e2p4mE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
D	HTHP	e2p4mD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
C	HTHP	e2p4mC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
B	HTHP	e2p4mB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
A	HTHP	e2p4mA1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	GFP-like non-fluorescent chromoprotein	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F, G, H	CRQ	Parent Component: GLN, TYR, GLY RESID: AA0189 PSI-MOD : 2-imino-glutamine 5-imidazolinone glycine MOD:00197

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.