Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd2nrac1 All alpha proteins DNA/RNA-binding 3-helical bundle 'Winged helix' DNA-binding domain Replication initiation protein Replication initiation protein PI (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2 FamilyReplication initiation protein8056260 4000166 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyWinged helix DNA-binding domain8056261 3000034 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyWinged helix DNA-binding domain8056262 3000034 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPF01051e2nraC1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01051ECOD (1.6)
CPF21205e2nraC2 A: alpha arraysX: HTHH: HTHT: wingedF: PF21205ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01051Initiator Replication protein, WH1 (Rep3_N)Initiator Replication protein, WH1This protein is an initiator of plasmid replication [1-6]. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This entry also includes RepA which is ...This protein is an initiator of plasmid replication [1-6]. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This entry also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene [3,4]. These proteins consist of two domains containing a winged helix-turn-helix motif, the N-terminal one, WH1, represented in this entry, is involved in the dimerization of RepE and an auxiliary binding to DNA. The C-terminal one, WH2, is related to a sequence-specific binding to the common 8 bp of the iteron [6].
Domain
PF21205Initiator Rep protein, WH2 (Rep3_C)Initiator Rep protein, WH2This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E ...This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene [1-3]. These proteins consist of two domains containing a winged helix-turn-helix motif: the N-terminal one, WH1, is involved in the dimerization of RepE and an auxiliary binding to DNA; the C-terminal one, WH2, represented in this entry, is related to a sequence-specific binding to the common 8 bp of the iteron [4,5].
Domain