2N0S
HADDOCK model of ferredoxin and [FeFe] hydrogenase complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02906 | e2n0sA2 | A: a/b three-layered sandwiches | X: Fe-only hydrogenase (From Topology) | H: Fe-only hydrogenase (From Topology) | T: Fe-only hydrogenase | F: PF02906 | ECOD (1.6) |
A | PF02256 | e2n0sA1 | A: extended segments | X: Fe-only hydrogenase smaller subunit (From Topology) | H: Fe-only hydrogenase smaller subunit (From Topology) | T: Fe-only hydrogenase smaller subunit | F: PF02256 | ECOD (1.6) |
B | PF00111 | e2n0sB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00111 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1780 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.40.950.10 | Alpha Beta | 3-Layer(aba) Sandwich | Fe-only Hydrogenase (Larger Subunit) | Chain L, domain 3 | CATH (4.3.0) |
B | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02906 | Iron only hydrogenase large subunit, C-terminal domain (Fe_hyd_lg_C) | Iron only hydrogenase large subunit, C-terminal domain | - | Domain | |
PF02256 | Iron hydrogenase small subunit (Fe_hyd_SSU) | Iron hydrogenase small subunit | This family represents the small subunit of the Fe-only hydrogenases EC:1.18.99.1. The subunit is comprised of alternating random coil and alpha helical structures that encompasses the large subunit in a novel protein fold [1]. | Domain | |
PF00111 | 2Fe-2S iron-sulfur cluster binding domain (Fer2) | 2Fe-2S iron-sulfur cluster binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Fe-hydrogenase | - | - | ||
Ferredoxin, chloroplastic | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004108 | Iron hydrogenase, large subunit, C-terminal | Domain | |
IPR009016 | Iron hydrogenase | Homologous Superfamily | |
IPR003149 | Iron hydrogenase, small subunit | Domain | |
IPR023383 | Ferredoxin, chloroplast transit peptide | Domain | |
IPR036010 | 2Fe-2S ferredoxin-like superfamily | Homologous Superfamily | |
IPR010241 | Ferredoxin [2Fe-2S], plant | Family | |
IPR001041 | 2Fe-2S ferredoxin-type iron-sulfur binding domain | Domain | |
IPR012675 | Beta-grasp domain superfamily | Homologous Superfamily | |
IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site | Binding Site |