2LNH | pdb_00002lnh

Enterohaemorrhagic E. coli (EHEC) exploits a tryptophan switch to hijack host F-actin assembly

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2lnhb1	All beta proteins	SH3-like barrel	SH3-domain	SH3-domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2lnhb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	EspF protein repeat-like	8102754	3002755	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SH3-domain	8073451	3000153	SCOP2B (2022-06-29)
A	SCOP2 Family	Wiscott-Aldrich syndrome protein, WASP, C-terminal domain	8081090	4001075	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Wiscott-Aldrich syndrome protein, WASP, C-terminal domain	8081091	3000677	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SH3_1	e2lnhB1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_1	ECOD (1.6)
A	PBD	e2lnhA1	A: alpha arrays	X: CRIB domain (From Topology)	H: CRIB domain (From Topology)	T: CRIB domain	F: PBD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	6.10.250.3330	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	TccP2/EspF(U)-like	CATH (4.3.0)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
A	3.90.810.10	Alpha Beta	Alpha-Beta Complex	SerineThreonine-protein kinase PAK-alpha	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF04806	EspF protein repeat (EspF)	EspF protein repeat	-	Repeat
B	PF14604	Variant SH3 domain (SH3_9)	Variant SH3 domain		Domain
A	PF00786	P21-Rho-binding domain (PBD)	P21-Rho-binding domain	Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Secreted effector protein EspF(U)	-	-	cellular anatomical structure extracellular region host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part
B	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	protein binding binding proline-rich region binding cytoskeletal protein binding actin binding cell adhesion molecule binding cadherin binding involved in cell-cell adhesion cadherin binding cell adhesion mediator activity cell-cell adhesion mediator activity	membrane organization cellular component organization plasma membrane organization cellular process cellular component organization or biogenesis endomembrane system organization positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process positive regulation of cellular component organization regulation of cellular component size positive regulation of biological process membrane organization cellular component organization plasma membrane organization cellular process cellular component organization or biogenesis endomembrane system organization positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process positive regulation of cellular component organization regulation of cellular component size positive regulation of biological process cellular component biogenesis regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly cellular component assembly positive regulation of protein polymerization protein-containing complex assembly actin filament-based process regulation of actin filament polymerization regulation of biological quality positive regulation of cellular process protein polymerization actin polymerization or depolymerization regulation of biological process regulation of actin filament organization actin cytoskeleton organization actin filament polymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization biological regulation regulation of actin polymerization or depolymerization actin filament organization regulation of cellular component biogenesis positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization regulation of protein polymerization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization supramolecular fiber organization positive regulation of actin filament polymerization cytoskeleton organization regulation of anatomical structure size actin crosslink formation actin filament bundle organization actin filament bundle assembly	cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytoplasm cytosol cell periphery plasma membrane membrane nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A	Neural Wiskott-Aldrich syndrome protein	GTPase regulator activity enzyme regulator activity nucleoside-triphosphatase regulator activity molecular function regulator activity cytoskeletal protein binding actin binding protein binding binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cell division plasma membrane tubulation membrane organization regulation of biological process regulation of cellular component organization regulation of cellular process negative regulation of cellular component organization cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cell division plasma membrane tubulation membrane organization regulation of biological process regulation of cellular component organization regulation of cellular process negative regulation of cellular component organization biological regulation negative regulation of biological process negative regulation of membrane tubulation regulation of plasma membrane organization plasma membrane organization negative regulation of cellular process endomembrane system organization regulation of membrane tubulation protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization actin filament organization organelle organization actin filament-based process supramolecular fiber organization cytoskeleton organization localization macromolecule localization protein-containing complex localization negative regulation of mononuclear cell migration negative regulation of locomotion regulation of cell motility regulation of lymphocyte migration regulation of cell migration cell migration regulation of immune system process negative regulation of lymphocyte migration cell motility regulation of mononuclear cell migration negative regulation of cell migration locomotion regulation of leukocyte migration lymphocyte migration leukocyte migration negative regulation of leukocyte migration negative regulation of immune system process immune system process regulation of locomotion mononuclear cell migration negative regulation of cell motility vesicle budding from membrane transport establishment of localization vesicle-mediated transport vesicle organization regulation of localization regulation of protein localization intracellular protein localization biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus multicellular organismal process cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cell differentiation anatomical structure development dendritic spine morphogenesis synapse organization system development developmental process dendritic spine development plasma membrane bounded cell projection organization dendritic spine organization postsynapse organization dendrite morphogenesis nervous system development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis cell junction organization neuron development neuron projection organization filopodium assembly positive regulation of cellular component organization positive regulation of biological process regulation of filopodium assembly plasma membrane bounded cell projection assembly positive regulation of cell projection organization positive regulation of filopodium assembly positive regulation of cellular process positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly vesicle transport along actin filament vesicle cytoskeletal trafficking vesicle localization establishment of organelle localization cellular localization establishment of vesicle localization intracellular transport actin filament-based movement organelle localization establishment of localization in cell cytoskeleton-dependent intracellular transport actin filament-based transport positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process regulation of postsynapse organization regulation of synapse organization regulation of synapse structure or activity regulation of biological quality import into cell positive regulation of endocytosis clathrin-dependent endocytosis positive regulation of receptor-mediated endocytosis regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport positive regulation of transport positive regulation of clathrin-dependent endocytosis receptor-mediated endocytosis endocytosis regulation of clathrin-dependent endocytosis spindle localization cell cycle cell cycle process	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular organelle intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol cell periphery plasma membrane membrane cell cortex cortical cytoskeleton actin cap cortical actin cytoskeleton synapse cell junction glutamatergic synapse organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane cytoplasmic vesicle intracellular vesicle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane endocytic vesicle membrane endocytic vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR044889	TccP2/EspF(U)-like superfamily	Homologous Superfamily
C	IPR006891	Type III secretion protein EspF	Repeat
B	IPR030060	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1, I-BAR domain	Domain
B	IPR035592	IRTKS, SH3 domain	Domain
B	IPR001452	SH3 domain	Domain
B	IPR027681	I-BAR domain containing protein IRSp53/IRTKS/Pinkbar	Family
B	IPR036028	SH3-like domain superfamily	Homologous Superfamily
B	IPR013606	IMD/I-BAR domain	Domain
B	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
A	IPR000095	CRIB domain	Domain
A	IPR000697	WH1/EVH1 domain	Domain
A	IPR036936	CRIB domain superfamily	Homologous Superfamily
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR003124	WH2 domain	Domain
A	IPR011026	Actin nucleation-promoting factor WAS, C-terminal	Homologous Superfamily
A	IPR033927	WASP family, EVH1 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q9UHR4	rheumatoid arthritis atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm spina bifida breast carcinoma interstitial cystitis lung adenocarcinoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pituitary cancer ulcerative colitis rheumatoid arthritis atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm spina bifida breast carcinoma interstitial cystitis lung adenocarcinoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pituitary cancer ulcerative colitis ductal breast carcinoma in situ invasive ductal breast carcinoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous carcinoma
A	Pharos: O00401	Wiskott-Aldrich syndrome adrenal cortex carcinoma breast cancer Drug-Induced Acute Liver Injury malignant colon neoplasm ovarian cancer rheumatoid arthritis astrocytic tumor medulloblastoma periodontitis spina bifida atypical teratoid rhabdoid tumor drug-induced liver injury large cell medulloblastoma osteosarcoma Wiskott-Aldrich syndrome adrenal cortex carcinoma breast cancer Drug-Induced Acute Liver Injury malignant colon neoplasm ovarian cancer rheumatoid arthritis astrocytic tumor medulloblastoma periodontitis spina bifida atypical teratoid rhabdoid tumor drug-induced liver injury large cell medulloblastoma osteosarcoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.