2J5Y | pdb_00002j5y

Crystal structure of the GA module from F.magna

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2j5yb2	All alpha proteins	immunoglobulin/albumin-binding domain-like	Bacterial immunoglobulin/albumin-binding domains	GA module, an albumin-binding domain	automated matches	(Finegoldia magna ) [TaxId: 1260 ],	SCOPe (2.08)
B	d2j5yb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Finegoldia magna ) [TaxId: 1260 ],	SCOPe (2.08)
A	d2j5ya2	All alpha proteins	immunoglobulin/albumin-binding domain-like	Bacterial immunoglobulin/albumin-binding domains	GA module, an albumin-binding domain	automated matches	(Finegoldia magna ) [TaxId: 1260 ],	SCOPe (2.08)
A	d2j5ya3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Finegoldia magna ) [TaxId: 1260 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Bacterial immunoglobulin/albumin-binding domains	8034625	3001373	SCOP2B (2022-06-29)
A	SCOP2 Family	GA module-like	8022245	4000723	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bacterial immunoglobulin/albumin-binding domains	8034625	3001373	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Alpha-2-MRAP_N	e2j5yB1	A: alpha bundles	X: EGF-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: Alpha-2-MRAP_N	ECOD (develop294)
A	GA-like	e2j5yA1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: Bacterial immunoglobulin/albumin-binding domains	T: Bacterial immunoglobulin/albumin-binding domains	F: GA-like	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.8.40	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	1.10.8.40	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR009063	Immunoglobulin/albumin-binding domain superfamily	Homologous Superfamily
A, B	IPR040912	Repeat of unknown function DUF5633	Repeat
A, B	IPR035152	GA-like domain	Domain
A, B	IPR019931	LPXTG cell wall anchor motif	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.