2GCU | pdb_00002gcu

X-Ray Structure of Gene Product from Arabidopsis Thaliana At1g53580

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Metallo-hydrolase/oxidoreductase	8100462	3001057	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Metallo-hydrolase/oxidoreductase	8100462	3001057	SCOP2B (2022-06-29)
C	SCOP2 Family	Glyoxalase II (hydroxyacylglutathione hydrolase)	8100461	4002292	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Metallo-hydrolase/oxidoreductase	8100462	3001057	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Metallo-hydrolase/oxidoreductase	8100462	3001057	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	LMWPc	e2gcuA1	A: alpha bundles	X: Globin-like	H: Globin-like	T: Globin-like	F: LMWPc	ECOD (develop294)
B	CopC	e2gcuB1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: CopC	ECOD (develop294)
C	CopC	e2gcuC1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: CopC	ECOD (develop294)
D	CopC	e2gcuD1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: CopC	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.60.15.10	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
B	3.60.15.10	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
C	3.60.15.10	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
D	3.60.15.10	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00753	Metallo-beta-lactamase superfamily (Lactamase_B)	Metallo-beta-lactamase superfamily		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative hydroxyacylglutathione hydrolase 3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity sulfur dioxygenase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity dioxygenase activity hydrolase activity, acting on ester bonds hydrolase activity cation binding ion binding binding metal ion binding small molecule binding	developmental process multicellular organismal process reproductive system development reproductive process developmental process involved in reproduction multicellular organism development fruit development seed development anatomical structure development reproductive structure development post-embryonic development system development embryo development embryo development ending in seed dormancy developmental process multicellular organismal process reproductive system development reproductive process developmental process involved in reproduction multicellular organism development fruit development seed development anatomical structure development reproductive structure development post-embryonic development system development embryo development embryo development ending in seed dormancy sulfur compound metabolic process metabolic process cellular process hydrogen sulfide metabolic process glutathione metabolic process modified amino acid metabolic process endosperm development tissue development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001279	Metallo-beta-lactamase	Domain
A, B, C, D	IPR044528	Persulfide dioxygenase-like, MBL-fold metallo-hydrolase domain	Domain
A, B, C, D	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
A, B, C, D	IPR051682	Mitochondrial Persulfide Dioxygenase	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	CSD	Parent Component: CYS RESID: AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.