2EWO | pdb_00002ewo

X-ray structure of putative agmatine deiminase Q8DW17, Northeast Structural Genomics target SmR6.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ewoa1	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	Porphyromonas-type peptidylarginine deiminase	Agmatine iminohydrolase	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
A	d2ewoa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
B	d2ewob2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
B	d2ewob3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
C	d2ewoc2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
C	d2ewoc3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
D	d2ewod2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
D	d2ewod3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
E	d2ewoe2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
E	d2ewoe3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
F	d2ewof2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
F	d2ewof3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
G	d2ewog2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
G	d2ewog3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
H	d2ewoh2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
H	d2ewoh3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
I	d2ewoi2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
I	d2ewoi3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
J	d2ewoj2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
J	d2ewoj3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
K	d2ewok2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
K	d2ewok3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
L	d2ewol2	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)
L	d2ewol3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Streptococcus mutans ) [TaxId: 1309 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Porphyromonas-type peptidylarginine deiminase	8027869	4002769	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Pentein	8040248	3000640	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Pentein	8040248	3000640	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CBS	e2ewoA1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
B	CBS	e2ewoB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
C	CBS	e2ewoC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
D	CBS	e2ewoD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
E	CBS	e2ewoE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
F	CBS	e2ewoF1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
G	CBS	e2ewoG1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
H	CBS	e2ewoH1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
I	CBS	e2ewoI1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
J	CBS	e2ewoJ1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
K	CBS	e2ewoK1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)
L	CBS	e2ewoL1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBS	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
B	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
C	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
D	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
E	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
F	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
G	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
H	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
I	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
J	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
K	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
L	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF04371	Porphyromonas-type peptidyl-arginine deiminase (PAD_porph)	Porphyromonas-type peptidyl-arginine deiminase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Putative agmatine deiminase	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines hydrolase activity protein-arginine deiminase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds agmatine deiminase activity	polyamine metabolic process putrescine biosynthetic process amine metabolic process biogenic amine biosynthetic process biosynthetic process amine biosynthetic process polyamine biosynthetic process putrescine metabolic process metabolic process cellular process biogenic amine metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR007466	Peptidyl-arginine deiminase, Porphyromonas-type	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR017754	Agmatine deiminase	Family