2E50 | pdb_00002e50

Crystal structure of SET/TAF-1beta/INHAT

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth Q]	d2e50q_	Alpha and beta proteins (a+b)	NAP-like	NAP-like	NAP-like	Protein SET	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth P]	d2e50p_	Alpha and beta proteins (a+b)	NAP-like	NAP-like	NAP-like	Protein SET	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2e50b_	Alpha and beta proteins (a+b)	NAP-like	NAP-like	NAP-like	Protein SET	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2e50a1	Alpha and beta proteins (a+b)	NAP-like	NAP-like	NAP-like	Protein SET	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth P]	SCOP2 Family	NAP-like	8021494	4003454	SCOP2 (2022-06-29)
C [auth P]	SCOP2 Superfamily	NAP-like	8033874	3000895	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	NAP-like	8033874	3000895	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	NAP-like	8033874	3000895	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth Q]	HTHP	e2e50Q1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
C [auth P]	RB_A	e2e50P1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: RB_A	ECOD (v294.1)
B	Peptidase_M9	e2e50B2	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Peptidase_M9	ECOD (v294.1)
A	NAP	e2e50A1	A: a+b two layers	X: NAP-like	H: NAP-like	T: NAP-like	F: NAP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth Q]	3.30.1120.90	Alpha Beta	2-Layer Sandwich	Arylsulfatase, C-terminal domain	Nucleosome assembly protein	CATH (4.3.0)
C [auth P]	1.20.5.1500	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C [auth P]	3.30.1120.90	Alpha Beta	2-Layer Sandwich	Arylsulfatase, C-terminal domain	Nucleosome assembly protein	CATH (4.3.0)
B	3.30.1120.90	Alpha Beta	2-Layer Sandwich	Arylsulfatase, C-terminal domain	Nucleosome assembly protein	CATH (4.3.0)
A	3.30.1120.90	Alpha Beta	2-Layer Sandwich	Arylsulfatase, C-terminal domain	Nucleosome assembly protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth P], D [auth Q]	PF00956	Nucleosome assembly protein (NAP) (NAP)	Nucleosome assembly protein (NAP)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth P], D [auth Q]	Protein SET	DNA binding binding nucleic acid binding enzyme regulator activity phosphatase inhibitor activity molecular function inhibitor activity phosphatase regulator activity molecular function regulator activity protein phosphatase regulator activity protein phosphatase inhibitor activity enzyme inhibitor activity protein binding histone binding chromatin binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular component organization or biogenesis nucleosome assembly nucleosome organization DNA replication DNA metabolic process cellular component disassembly protein-DNA complex disassembly protein-containing complex disassembly nucleosome disassembly neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death regulation of neuron apoptotic process	lipid droplet intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm cytosol perinuclear region of cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle lipid droplet intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm cytosol perinuclear region of cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen chromatin chromosome protein-containing complex endoplasmic reticulum endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth P], D [auth Q]	IPR037231	NAP-like superfamily	Homologous Superfamily
A, B, C [auth P], D [auth Q]	IPR002164	Nucleosome assembly protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C [auth P], D [auth Q]	Pharos: Q01105	Necrosis allergic rhinitis lung cancer plasma cell myeloma cancer lymphoplasmacytic lymphoma dermatomyositis medulloblastoma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.