2CZJ
Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2czja1 | All beta proteins | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
B [auth C] | d2czjc1 | All beta proteins | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
C [auth E] | d2czje1 | All beta proteins | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
D [auth G] | d2czjg1 | All beta proteins | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Small protein B (SmpB) | 8042603 | 3000956 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Small protein B (SmpB) | 8042603 | 3000956 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Small protein B (SmpB) | 8042603 | 3000956 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | Small protein B (SmpB) | 8042603 | 3000956 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01668 | e2czjA1 | A: beta barrels | X: OB-fold | H: Small protein B (SmpB) (From Topology) | T: Small protein B (SmpB) | F: PF01668 | ECOD (1.6) |
B [auth C] | PF01668 | e2czjC1 | A: beta barrels | X: OB-fold | H: Small protein B (SmpB) (From Topology) | T: Small protein B (SmpB) | F: PF01668 | ECOD (1.6) |
C [auth E] | PF01668 | e2czjE1 | A: beta barrels | X: OB-fold | H: Small protein B (SmpB) (From Topology) | T: Small protein B (SmpB) | F: PF01668 | ECOD (1.6) |
D [auth G] | PF01668 | e2czjG1 | A: beta barrels | X: OB-fold | H: Small protein B (SmpB) (From Topology) | T: Small protein B (SmpB) | F: PF01668 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.280.10 | Mainly Beta | Beta Barrel | Small Protein B | Chain: A | CATH (4.3.0) |
B [auth C] | 2.40.280.10 | Mainly Beta | Beta Barrel | Small Protein B | Chain: A | CATH (4.3.0) |
C [auth E] | 2.40.280.10 | Mainly Beta | Beta Barrel | Small Protein B | Chain: A | CATH (4.3.0) |
D [auth G] | 2.40.280.10 | Mainly Beta | Beta Barrel | Small Protein B | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | PF01668 | SmpB protein (SmpB) | SmpB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | IPR020081 | SsrA-binding protein, conserved site | Conserved Site |
A, B [auth C], C [auth E], D [auth G] | IPR023620 | Small protein B | Homologous Superfamily |
A, B [auth C], C [auth E], D [auth G] | IPR000037 | SsrA-binding protein | Family |