Annotations: 2C1D

Crystal structure of SoxXA from P. pantotrophus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2c1dh_	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Paracoccus pantotrophus ) [TaxId: 82367 ],	SCOPe (2.08)
F	d2c1df_	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Paracoccus pantotrophus ) [TaxId: 82367 ],	SCOPe (2.08)
D	d2c1dd_	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Paracoccus pantotrophus ) [TaxId: 82367 ],	SCOPe (2.08)
B	d2c1db_	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Paracoccus pantotrophus ) [TaxId: 82367 ],	SCOPe (2.08)
G	d2c1dg1	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
E	d2c1de1	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
C	d2c1dc1	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
A	d2c1da1	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Cytochrome c	8088145	3000815	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cytochrome c	8088145	3000815	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome c	8088145	3000815	SCOP2B (2022-06-29)
B	SCOP2 Family	Monodomain cytochrome c	8088144	4000635	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Cytochrome c	8088145	3000815	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	B	e2c1dH1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: B	ECOD (v295.2)
F	B	e2c1dF1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: B	ECOD (v295.2)
D	B	e2c1dD1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: B	ECOD (v295.2)
B	Sigma_1_2	e2c1dB1	A: alpha arrays	X: Globin-like	H: Globin-like	T: Globin-like	F: Sigma_1_2	ECOD (v295.2)
G	B	e2c1dG1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: B	ECOD (v295.2)
E	B	e2c1dE1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: B	ECOD (v295.2)
C	B	e2c1dC1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: B	ECOD (v295.2)
A	Sigma_1_2	e2c1dA1	A: alpha arrays	X: Globin-like	H: Globin-like	T: Globin-like	F: Sigma_1_2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
F	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
D	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
B	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
G	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
E	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
C	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	SOXX	binding tetrapyrrole binding heme binding electron transfer activity	-	-
A, C, E, G	SOXA	oxidoreductase activity catalytic activity sulfurtransferase activity transferase activity, transferring sulphur-containing groups transferase activity binding tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding oxidoreductase activity catalytic activity sulfurtransferase activity transferase activity, transferring sulphur-containing groups transferase activity binding tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding thiosulfate-cyanide sulfurtransferase activity protein heterodimerization activity protein binding protein dimerization activity oxidoreductase activity, acting on a sulfur group of donors oxidoreductase activity, acting on a sulfur group of donors, cytochrome as acceptor zinc ion binding electron transfer activity	sulfur compound metabolic process metabolic process cellular process sulfur oxidation	cellular anatomical structure extracellular region periplasmic space protein-containing complex cytochrome complex catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
B, D, F, H	IPR009056	Cytochrome c-like domain	Domain
B, D, F, H	IPR030999	Sulfur oxidation c-type cytochrome SoxX	Family
A, C, E, G	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A, C, E, G	IPR009056	Cytochrome c-like domain	Domain
A, C, E, G	IPR025710	L-cysteine S-thiosulfotransferase subunit SoxA	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, C, E, G	CSS	Parent Component: CYS : AA0269 : L-cysteine persulfide MOD:00274