2AHU | pdb_00002ahu

Crystal structure of Acyl-CoA transferase (YdiF) apoenzyme from Escherichia coli O157:H7.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ahua2	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase alpha subunit-like	Putative enzyme YdiF N-terminal domain	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
A	d2ahua1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase beta subunit-like	Putative enzyme YdiF C-terminal domain	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
B	d2ahub2	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase alpha subunit-like	Putative enzyme YdiF N-terminal domain	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
B	d2ahub1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase beta subunit-like	Putative enzyme YdiF C-terminal domain	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
C	d2ahuc2	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase alpha subunit-like	Putative enzyme YdiF N-terminal domain	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
C	d2ahuc1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase beta subunit-like	Putative enzyme YdiF C-terminal domain	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
D	d2ahud2	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase alpha subunit-like	Putative enzyme YdiF N-terminal domain	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
D	d2ahud1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase beta subunit-like	Putative enzyme YdiF C-terminal domain	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CoA transferase beta subunit-like	8024649	4001857	SCOP2 (2022-06-29)
A	SCOP2 Family	CoA transferase alpha subunit-like	8024651	4001854	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NagB/RpiA/CoA transferase-like	8037028	3000693	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NagB/RpiA/CoA transferase-like	8037030	3000693	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8037028	3000693	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8037030	3000693	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8037030	3000693	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8037028	3000693	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8037028	3000693	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8037030	3000693	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CoA_trans	e2ahuA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (v294.1)
B	RS_preATP-grasp-like	e2ahuB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (v294.1)
C	RS_preATP-grasp-like	e2ahuC1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (v294.1)
D	RS_preATP-grasp-like	e2ahuD1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RS_preATP-grasp-like	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
B	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
C	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
D	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01144	Coenzyme A transferase (CoA_trans)	Coenzyme A transferase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	putative enzyme ydiF	acetate CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity	protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis catabolic process lipid catabolic process ketone body catabolic process protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis catabolic process lipid catabolic process ketone body catabolic process primary metabolic process generation of precursor metabolites and energy fatty acid derivative catabolic process fatty acid derivative metabolic process small molecule metabolic process metabolic process ketone body metabolic process small molecule catabolic process lipid metabolic process fatty acid metabolic process oxoacid metabolic process short-chain fatty acid metabolic process carboxylic acid metabolic process organic acid metabolic process monocarboxylic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A, B, C, D	IPR014388	3-oxoacid CoA-transferase	Family
A, B, C, D	IPR004165	Coenzyme A transferase family I	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.