1XAE | pdb_00001xae

Crystal structure of wild type yellow fluorescent protein zFP538 from Zoanthus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1xaeb_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Zoanthus sp. ) [TaxId: 105402 ],	SCOPe (2.08)
A	d1xaea_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Zoanthus sp. ) [TaxId: 105402 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	GFP-like	8081053	3000576	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GFP-like	8081053	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	GFP	e1xaeB1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
A	GFP	e1xaeA1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.2.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	fluorescent protein FP538	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011584	Green fluorescent protein-related	Family
A, B	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	CH7	Parent Component: LYS, TYR, GLY RESID: AA0382 PSI-MOD : 2-tetrahydropyridinyl-5-imidazolinone glycine MOD:00387
A, B	CSO	Parent Component: CYS RESID: AA0382 , AA0205 PSI-MOD : 2-tetrahydropyridinyl-5-imidazolinone glycine MOD:00387 , L-cysteine sulfenic acid MOD:00210
A, B	NFA	Parent Component: PHE RESID: AA0382 , AA0205 , AA0094 PSI-MOD : 2-tetrahydropyridinyl-5-imidazolinone glycine MOD:00387 , L-cysteine sulfenic acid MOD:00210 , L-phenylalanine amide MOD:00103

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.