1Y4M | pdb_00001y4m

Crystal structure of human endogenous retrovirus HERV-FRD envelope protein (syncitin-2)

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd1y4mc_ Coiled coil proteins Stalk segment of viral fusion proteins Virus ectodomain Virus ectodomain HERV-FRD_6p24.1 provirus ancestral Env polyprotein human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1y4mb_ Coiled coil proteins Stalk segment of viral fusion proteins Virus ectodomain Virus ectodomain HERV-FRD_6p24.1 provirus ancestral Env polyprotein human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad1y4ma1 Coiled coil proteins Stalk segment of viral fusion proteins Virus ectodomain Virus ectodomain HERV-FRD_6p24.1 provirus ancestral Env polyprotein human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyVirus ectodomain 8034096 3001628 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyVirus ectodomain 8034096 3001628 SCOP2B (2022-06-29)
ASCOP2 FamilyVirus ectodomain 8021716 4003841 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyVirus ectodomain 8034096 3001628 SCOP2 (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
B1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
A1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
HERV-FRD_6p24.1 provirus ancestral Env polyprotein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR018154TLV/ENV coat polyproteinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B, C
Pharos:  P60508