1Y19 | pdb_00001y19

Structural basis for phosphatidylinositol phosphate kinase type I-gamma binding to talin at focal adhesions

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d1y19l1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
L	d1y19l2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
J	d1y19j1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
J	d1y19j2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
H	d1y19h1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
H	d1y19h2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
F	d1y19f1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
F	d1y19f2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d1y19d1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d1y19d2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d1y19b1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d1y19b2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Talin-1	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2022-06-29)
B	SCOP2 Family	FERM domain-like	8031876	4000747	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	FERM central domain-like	8044254	3001227	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	PH domain-like	8044255	3000134	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Rhv	e1y19L1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Rhv	ECOD (v295.2)
L	Cation_efflux	e1y19L2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
J	Rhv	e1y19J1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Rhv	ECOD (v295.2)
J	Cation_efflux	e1y19J2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
H	Rhv	e1y19H1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Rhv	ECOD (v295.2)
H	Cation_efflux	e1y19H2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
F	Rhv	e1y19F1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Rhv	ECOD (v295.2)
F	Cation_efflux	e1y19F2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
D	Rhv	e1y19D1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Rhv	ECOD (v295.2)
D	Cation_efflux	e1y19D2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
B	Rhv	e1y19B1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Rhv	ECOD (v295.2)
B	Cation_efflux	e1y19B2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
L	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
J	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
J	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
H	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
H	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
F	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
F	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
D	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
D	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
B	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L	PF02174	PTB domain (IRS-1 type) (IRS)	PTB domain (IRS-1 type)		Domain
B, D, F, H, J B, D, F, H, J, L	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L	Talin 1	ion binding binding anion binding phosphatidylinositol binding small molecule binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding actin filament binding LIM domain binding protein domain specific binding vinculin binding cell adhesion molecule binding ion binding binding anion binding phosphatidylinositol binding small molecule binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding actin filament binding LIM domain binding protein domain specific binding vinculin binding cell adhesion molecule binding integrin binding signaling receptor binding structural constituent of cytoskeleton structural molecule activity modified amino acid binding phospholipid binding lipid binding phosphatidylserine binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process integrin activation cellular component organization or biogenesis cortical cytoskeleton organization microtubule cytoskeleton organization cytoplasmic microtubule organization cortical microtubule organization organelle organization microtubule-based process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process integrin activation cellular component organization or biogenesis cortical cytoskeleton organization microtubule cytoskeleton organization cytoplasmic microtubule organization cortical microtubule organization organelle organization microtubule-based process supramolecular fiber organization cytoskeleton organization cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication signal transduction actin cytoskeleton organization actin filament-based process cell junction organization cell junction assembly cell-substrate junction assembly cell-substrate junction organization cortical actin cytoskeleton organization cell adhesion cell-cell adhesion	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction ruffle cell leading edge plasma membrane membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction ruffle cell leading edge plasma membrane membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane intracellular anatomical structure intracellular membraneless organelle intracellular organelle centrosome microtubule organizing center cytoskeleton centriolar satellite organelle membraneless organelle microtubule cytoskeleton cell surface cytoplasm cytosol cell-cell junction adherens junction
A, C, E, G, I A, C, E, G, I, K	Phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	cytoskeletal protein binding protein binding binding talin binding 1-phosphatidylinositol-4-phosphate 5-kinase activity phosphatidylinositol kinase activity kinase activity lipid kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups adenyl ribonucleotide binding nucleotide binding cytoskeletal protein binding protein binding binding talin binding 1-phosphatidylinositol-4-phosphate 5-kinase activity phosphatidylinositol kinase activity kinase activity lipid kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	import into cell localization transport phagocytosis endocytosis establishment of localization glycerophospholipid biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process import into cell localization transport phagocytosis endocytosis establishment of localization glycerophospholipid biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phosphatidylinositol phosphate biosynthetic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process metabolic process cellular process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process multicellular organismal process regulation of body fluid levels wound healing response to stimulus homotypic cell-cell adhesion cell activation hemostasis biological regulation platelet aggregation blood coagulation cell adhesion cell-cell adhesion response to stress coagulation regulation of biological quality response to wounding platelet activation regulation of localization cellular localization regulation of cellular component organization regulation of cellular process synaptic vesicle cycle regulation of synaptic vesicle recycling vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse cellular component organization synaptic vesicle recycling regulation of synaptic vesicle endocytosis establishment of localization in cell cellular component organization or biogenesis regulation of endocytosis synaptic vesicle endocytosis regulation of biological process regulation of transport phosphatidylinositol metabolic process phosphatidylinositol biosynthetic process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development animal gross anatomical part developmental process chemotaxis taxis response to chemical response to external stimulus locomotion secretion by cell exocytosis secretion export from cell receptor internalization postsynaptic neurotransmitter receptor internalization regulation of receptor internalization regulation of postsynaptic neurotransmitter receptor internalization regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis receptor-mediated endocytosis	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction presynaptic endocytic zone synapse membrane plasma membrane presynaptic membrane synaptic membrane cell periphery presynapse presynaptic endocytic zone membrane cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction presynaptic endocytic zone synapse membrane plasma membrane presynaptic membrane synaptic membrane cell periphery presynapse presynaptic endocytic zone membrane plasma membrane region ruffle cell leading edge leading edge membrane plasma membrane bounded cell projection cell projection ruffle membrane cell projection membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen glutamatergic synapse cell-cell junction adherens junction uropod cell trailing edge postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle organelle membrane phagocytic cup

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L	IPR000299	FERM domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR002404	IRS-type PTB domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR019748	FERM central domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR015009	Vinculin-binding site-containing domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR032425	Talin, N-terminal F0 domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR011993	PH-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR035964	I/LWEQ domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR015224	Talin, central	Domain
B, D, F, H, J B, D, F, H, J, L	IPR054082	Talin, IBS2B domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR019749	Band 4.1 domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR057346	Talin-1/2, VBS2 domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR035963	FERM superfamily, second domain	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR036476	Talin, central domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR036723	Alpha-catenin/vinculin-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR002558	I/LWEQ domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR019747	FERM conserved site	Conserved Site
B, D, F, H, J B, D, F, H, J, L	IPR054060	Talin 1-like, rod-segment domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR049108	Talin, R4 domain	Domain
B, D, F, H, J B, D, F, H, J, L	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR037438	Talin-1/2, rod-segment	Domain
A, C, E, G, I A, C, E, G, I, K	IPR027483	Phosphatidylinositol-4-phosphate 4/5-kinase, C-terminal domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR002498	Phosphatidylinositol-4-phosphate 4/5-kinase, core	Domain
A, C, E, G, I A, C, E, G, I, K	IPR027484	Phosphatidylinositol-4-phosphate 5-kinase, N-terminal	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR023610	Phosphatidylinositol-4/5-phosphate 5/4-kinase	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.