Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1xxia1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain delta subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad1xxia2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain delta subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Fd1xxif1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain delta subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Fd1xxif2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain delta subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1xxib1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain gamma subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd1xxib2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain gamma subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd1xxic1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain gamma subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd1xxic2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain gamma subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd1xxid1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain gamma subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd1xxid2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain gamma subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Gd1xxig1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain gamma subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Gd1xxig2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain gamma subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Hd1xxih1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain gamma subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Hd1xxih2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain gamma subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Id1xxii1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain gamma subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Id1xxii2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain gamma subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed1xxie1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain delta prime subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed1xxie2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain delta prime subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Jd1xxij1 All alpha proteins post-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain delta prime subunit (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Jd1xxij2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain delta prime subunit of DNA polymerase III, N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyDNA polymerases epsilon N-terminal domain (Dpoe2NT)-like8104157 3002834 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8034551 3000691 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases8034535 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRecA-like P-loop NTPases8034535 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8034551 3000691 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyDNA polymerases epsilon N-terminal domain (Dpoe2NT)-like8104157 3002834 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8034547 3000691 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases8034548 3002019 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDNA polymerases epsilon N-terminal domain (Dpoe2NT)-like8104152 3002834 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDNA polymerases epsilon N-terminal domain (Dpoe2NT)-like8104152 3002834 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8034547 3000691 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases8034548 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDNA polymerases epsilon N-terminal domain (Dpoe2NT)-like8104152 3002834 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8034547 3000691 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRecA-like P-loop NTPases8034548 3002019 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyDNA polymerases epsilon N-terminal domain (Dpoe2NT)-like8104152 3002834 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRecA-like P-loop NTPases8034548 3002019 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8034547 3000691 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyDNA polymerases epsilon N-terminal domain (Dpoe2NT)-like8104152 3002834 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRecA-like P-loop NTPases8034548 3002019 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8034547 3000691 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRecA-like P-loop NTPases8034548 3002019 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyDNA polymerases epsilon N-terminal domain (Dpoe2NT)-like8104152 3002834 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8034547 3000691 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8038004 3000691 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPost-AAA+ oligomerization domain-like8038004 3000691 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADNA_pol3_delt_Ce1xxiA1 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNA_pol3_delt_CECOD (1.6)
ADNA_pol3_delta_Ce1xxiA2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: DNA_pol3_delta_CECOD (1.6)
ADNA_pol3_delta_Ne1xxiA3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DNA_pol3_delta_NECOD (1.6)
FDNA_pol3_delt_Ce1xxiF1 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNA_pol3_delt_CECOD (1.6)
FDNA_pol3_delta_Ce1xxiF2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: DNA_pol3_delta_CECOD (1.6)
FDNA_pol3_delta_Ne1xxiF3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DNA_pol3_delta_NECOD (1.6)
BDNA_pol3_gamma3e1xxiB1 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNA_pol3_gamma3ECOD (1.6)
BAAA_assoc_2_3e1xxiB3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AAA_assoc_2_3ECOD (1.6)
BSigma54_activate1xxiB4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
CDNA_pol3_gamma3e1xxiC1 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNA_pol3_gamma3ECOD (1.6)
CAAA_assoc_2_3e1xxiC3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AAA_assoc_2_3ECOD (1.6)
CSigma54_activate1xxiC4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
DDNA_pol3_gamma3e1xxiD1 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNA_pol3_gamma3ECOD (1.6)
DAAA_assoc_2_3e1xxiD3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AAA_assoc_2_3ECOD (1.6)
DSigma54_activate1xxiD4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
GDNA_pol3_gamma3e1xxiG1 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNA_pol3_gamma3ECOD (1.6)
GAAA_assoc_2_3e1xxiG3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AAA_assoc_2_3ECOD (1.6)
GSigma54_activate1xxiG2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
HDNA_pol3_gamma3e1xxiH1 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNA_pol3_gamma3ECOD (1.6)
HAAA_assoc_2_3e1xxiH3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AAA_assoc_2_3ECOD (1.6)
HSigma54_activate1xxiH2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
IDNA_pol3_gamma3e1xxiI1 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNA_pol3_gamma3ECOD (1.6)
IAAA_assoc_2_3e1xxiI3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AAA_assoc_2_3ECOD (1.6)
ISigma54_activate1xxiI4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
EDNApol3-delta_Ce1xxiE2 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNApol3-delta_CECOD (1.6)
EPRK07993_2nde1xxiE4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK07993_2ndECOD (1.6)
EPRK07993_1ste1xxiE3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PRK07993_1stECOD (1.6)
JDNApol3-delta_Ce1xxiJ2 A: alpha arraysX: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology)T: DNA polymerase III clamp loader subunits, C-terminal domainF: DNApol3-delta_CECOD (1.6)
JPRK07993_2nde1xxiJ3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PRK07993_2ndECOD (1.6)
JPRK07993_1ste1xxiJ4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PRK07993_1stECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, F
PF06144DNA polymerase III, delta subunit (DNA_pol3_delta)DNA polymerase III, delta subunit- Family
A, F
PF14840Processivity clamp loader gamma complex DNA pol III C-term (DNA_pol3_delt_C)Processivity clamp loader gamma complex DNA pol III C-term- Family
B, C, D, G, H
PF12169DNA polymerase III subunits gamma and tau domain III (DNA_pol3_gamma3)DNA polymerase III subunits gamma and tau domain III- Family
B, C, D, G, H
PF13177DNA polymerase III, delta subunit (DNA_pol3_delta2)DNA polymerase III, delta subunitDNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as ...DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as HolA.
Domain
E, J
PF09115DNA polymerase III, delta subunit, C terminal (DNApol3-delta_C)DNA polymerase III, delta subunit, C terminalMembers of this family, which are predominantly found in prokaryotic DNA polymerase III, assume an alpha helical structure, with a core of five alpha helices, and an additional small helix. They are essential for the formation of the polymerase clamp ...Members of this family, which are predominantly found in prokaryotic DNA polymerase III, assume an alpha helical structure, with a core of five alpha helices, and an additional small helix. They are essential for the formation of the polymerase clamp loader [1].
Domain
E, J
PF13177DNA polymerase III, delta subunit (DNA_pol3_delta2)DNA polymerase III, delta subunitDNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as ...DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as HolA.
Domain
E, J
PF21500DNA polymerase III subunit delta', AAA+ ATPase lid domain (HolB_lid)DNA polymerase III subunit delta', AAA+ ATPase lid domainDNA polymerase III subunit delta' is part of the beta sliding clamp loading complex, which hydrolyses ATP to load the beta clamp onto primed DNA to form the DNA replication pre-initiation complex [1,2]. It consists of three domains, of which the N-te ...DNA polymerase III subunit delta' is part of the beta sliding clamp loading complex, which hydrolyses ATP to load the beta clamp onto primed DNA to form the DNA replication pre-initiation complex [1,2]. It consists of three domains, of which the N-terminal domain contains a nonfunctional nucleotide binding site. This entry represents the lid domain (or domain 2 in [1]).
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, F
DNA polymerase III, delta subunit
B, C, D, G, H
DNA polymerase III subunit gamma
E, J
DNA polymerase III, delta prime subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, F
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalHomologous Superfamily
A, F
IPR010372DNA polymerase III delta, N-terminalDomain
A, F
IPR005790DNA polymerase III, delta subunitFamily
A, F
IPR032780DNA polymerase III subunit delta, C-terminalDomain
A, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B, C, D, G, H
IPR001270ClpA/B familyFamily
B, C, D, G, H
IPR021029DNA polymerase III, tau subunit, domain VDomain
B, C, D, G, H
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalHomologous Superfamily
B, C, D, G, H
IPR022754DNA polymerase III, gamma subunit, domain IIIDomain
B, C, D, G, H
IPR012763DNA polymerase III, subunit gamma/ tau, N-terminalDomain
B, C, D, G, H
IPR038249DNA polymerase III, tau subunit, domain V superfamilyHomologous Superfamily
B, C, D, G, H
IPR003593AAA+ ATPase domainDomain
B, C, D, G, H
IPR022001DNA polymerase III subunit tau, DnaB-binding domain IVDomain
B, C, D, G, H
IPR045085DNA polymerase III, subunit gamma/tau, helical lid domainDomain
B, C, D, G, H
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E, J
IPR048731DNA polymerase III subunit delta', AAA+ ATPase lid domain, gammaproteobacteriaDomain
E, J
IPR004622DNA polymerase III, delta prime subunitDomain
E, J
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalHomologous Superfamily
E, J
IPR015199DNA polymerase III, delta subunit, C-terminalDomain
E, J
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily