1WMI | pdb_00001wmi

Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1wmid_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	RelB-like	automated matches	automated matches	(Pyrococcus horikoshii OT3 ) [TaxId: 70601 ],	SCOPe (2.08)
B	d1wmib1	All alpha proteins	Non-globular all-alpha subunits of globular proteins	RelB-like	RelB-like	Hypothetical protein PHS014	(Pyrococcus horikoshii OT3 ) [TaxId: 70601 ],	SCOPe (2.08)
C	d1wmic_	Alpha and beta proteins (a+b)	RelE-like	RelE-like	RelE-like	automated matches	(Pyrococcus horikoshii OT3 ) [TaxId: 70601 ],	SCOPe (2.08)
A	d1wmia1	Alpha and beta proteins (a+b)	RelE-like	RelE-like	RelE-like	Hypothetical protein PHS013	(Pyrococcus horikoshii OT3 ) [TaxId: 70601 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	RelB-like	8033108	3001878	SCOP2B (2022-06-29)
B	SCOP2 Family	relb-like	8020728	4001580	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	RelB-like	8033108	3001878	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	RelE-like	8033107	3000741	SCOP2B (2022-06-29)
A	SCOP2 Family	RelE-like	8020727	4003388	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RelE-like	8033107	3000741	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Stathmin	e1wmiD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Stathmin	ECOD (v294.1)
B	DUF5646	e1wmiB1	A: extended segments	X: RelB-like	H: RelB-like	T: RelB-like	F: DUF5646	ECOD (v294.1)
C	Polyketide_cyc2	e1wmiC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Polyketide_cyc2	ECOD (v294.1)
A	ParE_toxin	e1wmiA1	A: a+b two layers	X: RelE-like	H: RelE-like	T: RelE-like	F: ParE_toxin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	6.10.250.250	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	6.10.250.250	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
A	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR043706	Protein of unknown function DUF5646	Family
A, C	IPR007712	Toxin-antitoxin system, RelE/ParE toxin family	Family
A, C	IPR035093	Toxin-antitoxin system, RelE/ParE toxin domain superfamily	Homologous Superfamily
A, C	IPR052747	Type II TA system RelE toxin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.