1TX9 | pdb_00001tx9

gpd prior to capsid assembly

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1tx9a1	All alpha proteins	Scaffolding protein gpD of bacteriophage procapsid	Scaffolding protein gpD of bacteriophage procapsid	Scaffolding protein gpD of bacteriophage procapsid	Scaffolding protein gpD of bacteriophage procapsid	(Sinsheimervirus phiX174 ) [TaxId: 10847 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Scaffolding protein gpD of bacteriophage procapsid	8032652	3000749	SCOP2B (2022-06-29)
A	SCOP2 Family	Scaffolding protein gpD of bacteriophage procapsid	8020272	4001096	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Scaffolding protein gpD of bacteriophage procapsid	8032652	3000749	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	gpD	e1tx9B1	A: alpha arrays	X: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	H: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	T: Scaffolding protein gpD of bacteriophage procapsid	F: gpD	ECOD (1.6)
A	gpD	e1tx9A1	A: alpha arrays	X: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	H: Scaffolding protein gpD of bacteriophage procapsid (From Topology)	T: Scaffolding protein gpD of bacteriophage procapsid	F: gpD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.1850.10	Mainly Alpha	Orthogonal Bundle	Procapsid Of Bacteriophage Phix174, Chain 1	Scaffold protein D	CATH (4.3.0)
A	1.10.1850.10	Mainly Alpha	Orthogonal Bundle	Procapsid Of Bacteriophage Phix174, Chain 1	Scaffold protein D	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Scaffolding protein D	-	virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036632	Scaffold protein D superfamily	Homologous Superfamily
A, B	IPR004196	Scaffold protein D	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.