1SHY
The Crystal Structure of HGF beta-chain in Complex with the Sema Domain of the Met Receptor.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1shya_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Eukaryotic proteases | Hepatocyte growth factor, HGF | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1shyb1 | All beta proteins | 7-bladed beta-propeller | Sema domain | Sema domain | Hepatocyte growth factor receptor | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1shyb2 | Small proteins | Trefoil/Plexin domain-like | Plexin repeat | Plexin repeat | Hepatocyte growth factor receptor | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Trypsin-like serine proteases | 8042342 | 3000114 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Sema domain-like | 8027086 | 4000934 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Plexin repeat-like | 8027087 | 4001807 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Sema domain-like | 8039465 | 3000180 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Plexin repeat-like | 8039466 | 3000415 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Trypsin_1 | e1shyA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: Trypsin_1 | ECOD (1.6) |
B | Sema_2 | e1shyB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Sema_2 | ECOD (1.6) |
B | PSI_1 | e1shyB2 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
B | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
B | 3.30.1680.10 | Alpha Beta | 2-Layer Sandwich | ligand-binding face of the semaphorins, domain 2 | ligand-binding face of the semaphorins, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00089 | Trypsin (Trypsin) | Trypsin | - | Domain | |
PF01437 | Plexin repeat (PSI) | Plexin repeat | - | Family | |
PF01833 | IPT/TIG domain (TIG) | IPT/TIG domain | This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family d ... | Domain | |
PF01403 | Sema domain (Sema) | Sema domain | - | Repeat |