1SB3 | pdb_00001sb3

Structure of 4-hydroxybenzoyl-CoA reductase from Thauera aromatica

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1sb3f1	All alpha proteins	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, C-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
F	d1sb3f2	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	2Fe-2S ferredoxin-like	2Fe-2S ferredoxin domains from multidomain proteins	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
C	d1sb3c1	All alpha proteins	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, C-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
C	d1sb3c2	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	2Fe-2S ferredoxin-like	2Fe-2S ferredoxin domains from multidomain proteins	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
E	d1sb3e1	Alpha and beta proteins (a+b)	CO dehydrogenase flavoprotein C-domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	4-hydroxybenzoyl-CoA reductase beta subunit HrcB, C-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
E	d1sb3e2	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CO dehydrogenase flavoprotein N-terminal domain-like	4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
B	d1sb3b1	Alpha and beta proteins (a+b)	CO dehydrogenase flavoprotein C-domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	4-hydroxybenzoyl-CoA reductase beta subunit HrcB, C-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
B	d1sb3b2	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CO dehydrogenase flavoprotein N-terminal domain-like	4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
D	d1sb3d1	Alpha and beta proteins (a+b)	alpha/beta-Hammerhead	CO dehydrogenase molybdoprotein N-domain-like	CO dehydrogenase molybdoprotein N-domain-like	4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, N-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
D	d1sb3d2	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
A	d1sb3a1	Alpha and beta proteins (a+b)	alpha/beta-Hammerhead	CO dehydrogenase molybdoprotein N-domain-like	CO dehydrogenase molybdoprotein N-domain-like	4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, N-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)
A	d1sb3a2	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain	(Thauera aromatica ) [TaxId: 59405 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	2Fe-2S ferredoxin-like	8042287	3000113	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CO dehydrogenase ISP C-domain like	8042285	3000439	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CO dehydrogenase ISP C-domain like	8042285	3000439	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	2Fe-2S ferredoxin-like	8042287	3000113	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	FAD-binding/transporter-associated domain-like	8042284	3000913	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CO dehydrogenase flavoprotein C-terminal domain-like	8042283	3001921	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FAD-binding/transporter-associated domain-like	8042284	3000913	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CO dehydrogenase flavoprotein C-terminal domain-like	8042283	3001921	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Molybdenum cofactor-binding domain	8042281	3000625	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CO dehydrogenase molybdoprotein N-domain-like	8042279	3000847	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CO dehydrogenase molybdoprotein N-domain-like	8042279	3000847	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Molybdenum cofactor-binding domain	8042281	3000625	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	PAP2	e1sb3F1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: PAP2	ECOD (v294.1)
F	S4	e1sb3F2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: S4	ECOD (v294.1)
C	PAP2	e1sb3C1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: PAP2	ECOD (v294.1)
C	S4	e1sb3C2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: S4	ECOD (v294.1)
E	YceM-like_C	e1sb3E1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: YceM-like_C	ECOD (v294.1)
E	LRR_6,LRR_RI_capping	e1sb3E2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: LRR_6,LRR_RI_capping	ECOD (v294.1)
B	YceM-like_C	e1sb3B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: YceM-like_C	ECOD (v294.1)
B	LRR_6,LRR_RI_capping	e1sb3B2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: LRR_6,LRR_RI_capping	ECOD (v294.1)
D	Biotin_carb_C	e1sb3D2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Biotin_carb_C	ECOD (v294.1)
D	Adaptin_N, Cnd1	e1sb3D1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Adaptin_N, Cnd1	ECOD (v294.1)
A	Biotin_carb_C	e1sb3A2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Biotin_carb_C	ECOD (v294.1)
A	Adaptin_N, Cnd1	e1sb3A1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Adaptin_N, Cnd1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (4.3.0)
F	1.10.150.120	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
C	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (4.3.0)
C	1.10.150.120	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
E	3.30.390.50	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	3.30.390.50	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
D	3.30.365.10	Alpha Beta	2-Layer Sandwich	Aldehyde Oxidoreductase	domain 4	CATH (4.3.0)
D	3.90.1170.50	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase	domain 3	CATH (4.3.0)
A	3.30.365.10	Alpha Beta	2-Layer Sandwich	Aldehyde Oxidoreductase	domain 4	CATH (4.3.0)
A	3.90.1170.50	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase	domain 3	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	4-hydroxybenzoyl-CoA reductase gamma subunit	oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor oxidoreductase activity 4-hydroxybenzoyl-CoA reductase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
B, E	4-hydroxybenzoyl-CoA reductase beta subunit	oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor oxidoreductase activity 4-hydroxybenzoyl-CoA reductase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity FAD binding flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor oxidoreductase activity 4-hydroxybenzoyl-CoA reductase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity FAD binding flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding cation binding metal ion binding	-	-
A, D	4-hydroxybenzoyl-CoA reductase alpha subunit	oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor oxidoreductase activity 4-hydroxybenzoyl-CoA reductase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR002888	[2Fe-2S]-binding	Domain
C, F	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
C, F	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
C, F	IPR017606	4-hydroxybenzoyl-CoA reductase, gamma subunit	Family
C, F	IPR036884	[2Fe-2S]-binding domain superfamily	Homologous Superfamily
C, F	IPR051452	Diverse Oxidoreductases	Family
C, F	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
C, F	IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	Binding Site
B, E	IPR016167	FAD-binding, type PCMH, subdomain 1	Homologous Superfamily
B, E	IPR036683	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Homologous Superfamily
B, E	IPR051312	Diverse Substrate Oxidoreductases	Family
B, E	IPR017608	4-hydroxybenzoyl-CoA reductase, beta subunit	Family
B, E	IPR016166	FAD-binding domain, PCMH-type	Domain
B, E	IPR002346	Molybdopterin dehydrogenase, FAD-binding	Domain
B, E	IPR036318	FAD-binding, type PCMH-like superfamily	Homologous Superfamily
B, E	IPR016169	FAD-binding, type PCMH, subdomain 2	Homologous Superfamily
B, E	IPR005107	CO dehydrogenase flavoprotein, C-terminal	Domain
A, D	IPR046867	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Domain
A, D	IPR017607	4-hydroxybenzoyl-CoA reductase, alpha subunit	Family
A, D	IPR000674	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Domain
A, D	IPR016208	Aldehyde oxidase/xanthine dehydrogenase-like	Family
A, D	IPR036856	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Homologous Superfamily
A, D	IPR037165	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Homologous Superfamily
A, D	IPR008274	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Domain