1QVY | pdb_00001qvy

Crystal structure of RhoGDI K(199,200)R double mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1qvyd_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	RhoGDI-like	Rho GDP-dissociation inhibitor 1, RhoGDI	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1qvyc_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	RhoGDI-like	Rho GDP-dissociation inhibitor 1, RhoGDI	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1qvyb_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	RhoGDI-like	Rho GDP-dissociation inhibitor 1, RhoGDI	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1qvya_	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	RhoGDI-like	Rho GDP-dissociation inhibitor 1, RhoGDI	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	E set domains	8055013	3000070	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	E set domains	8055013	3000070	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	E set domains	8055013	3000070	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	E set domains	8055013	3000070	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Copper-bind	e1qvyD1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
C	Copper-bind	e1qvyC1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
B	Copper-bind	e1qvyB1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
A	Copper-bind	e1qvyA1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.70.50.30	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII	Chain A, domain 1	CATH (4.3.0)
C	2.70.50.30	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII	Chain A, domain 1	CATH (4.3.0)
B	2.70.50.30	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII	Chain A, domain 1	CATH (4.3.0)
A	2.70.50.30	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02115	RHO protein GDP dissociation inhibitor (Rho_GDI)	RHO protein GDP dissociation inhibitor		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Rho GDP-dissociation inhibitor 1	GTPase regulator activity enzyme regulator activity GDP-dissociation inhibitor activity nucleoside-triphosphatase regulator activity Rho GDP-dissociation inhibitor activity molecular function regulator activity enzyme activator activity GTPase activator activity molecular function activator activity	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus semaphorin-plexin signaling pathway signaling biological regulation cell communication cellular process signal transduction regulation of localization localization regulation of protein localization cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus semaphorin-plexin signaling pathway signaling biological regulation cell communication cellular process signal transduction regulation of localization localization regulation of protein localization macromolecule localization intracellular protein localization negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death small GTPase-mediated signal transduction Rho protein signal transduction intracellular signal transduction intracellular signaling cassette cellular localization transport regulation of transport regulation of synaptic vesicle cycle synaptic vesicle cycle regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse establishment of localization in cell regulation of signaling regulation of small GTPase mediated signal transduction regulation of signal transduction regulation of Rho protein signal transduction regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication	cell periphery cellular anatomical structure immunological synapse plasma membrane membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle cell periphery cellular anatomical structure immunological synapse plasma membrane membrane intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytoplasm cytosol Schaffer collateral - CA1 synapse synapse cell junction nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR024792	Rho GDP-dissociation inhibitor domain superfamily	Homologous Superfamily
A, B, C, D	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B, C, D	IPR000406	Rho protein GDP-dissociation inhibitor	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P52565	nephrotic syndrome, type 8 breast carcinoma HIV infectious disease keloid Neoplasm Metastasis Pick disease acute myeloid leukemia chronic obstructive pulmonary disease large cell medulloblastoma malignant mesothelioma polycystic ovary syndrome breast cancer congestive heart failure lung cancer medulloblastoma nephrotic syndrome, type 8 breast carcinoma HIV infectious disease keloid Neoplasm Metastasis Pick disease acute myeloid leukemia chronic obstructive pulmonary disease large cell medulloblastoma malignant mesothelioma polycystic ovary syndrome breast cancer congestive heart failure lung cancer medulloblastoma ovarian cancer psoriasis glioblastoma malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.