1Q5W
Ubiquitin Recognition by Npl4 Zinc-Fingers
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1q5wa1 | Small proteins | Rubredoxin-like | Ran binding protein zinc finger-like | Ran binding protein zinc finger-like | Npl4 | Norway rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
A | d1q5wa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Norway rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
B | d1q5wb_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ran binding protein zinc finger-like | 8027440 | 4000343 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ran binding protein zinc finger-like | 8039819 | 3000133 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-RanBP | e1q5wA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-RanBP | ECOD (1.6) |
B | ubiquitin_1 | e1q5wB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007717 | Nuclear pore localisation protein NPL4, C-terminal | Domain | |
IPR036443 | Zinc finger, RanBP2-type superfamily | Homologous Superfamily | |
IPR007716 | NPL4, zinc-binding putative | Domain | |
IPR016563 | Nuclear protein localization protein 4 | Family | |
IPR037518 | MPN domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR001876 | Zinc finger, RanBP2-type | Domain | |
IPR024682 | Nuclear pore localisation protein Npl4, ubiquitin-like domain | Domain | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |