1P4E | pdb_00001p4e

Flpe W330F mutant-DNA Holliday Junction Complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J [auth D]	d1p4ed1	All alpha proteins	SAM domain-like	lambda integrase-like, N-terminal domain	lambda integrase-like, N-terminal domain	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
J [auth D]	d1p4ed2	Alpha and beta proteins (a+b)	DNA breaking-rejoining enzymes	DNA breaking-rejoining enzymes	Lambda integrase-like, catalytic core	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
I [auth C]	d1p4ec1	All alpha proteins	SAM domain-like	lambda integrase-like, N-terminal domain	lambda integrase-like, N-terminal domain	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
I [auth C]	d1p4ec2	Alpha and beta proteins (a+b)	DNA breaking-rejoining enzymes	DNA breaking-rejoining enzymes	Lambda integrase-like, catalytic core	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
H [auth B]	d1p4eb1	All alpha proteins	SAM domain-like	lambda integrase-like, N-terminal domain	lambda integrase-like, N-terminal domain	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
H [auth B]	d1p4eb2	Alpha and beta proteins (a+b)	DNA breaking-rejoining enzymes	DNA breaking-rejoining enzymes	Lambda integrase-like, catalytic core	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
H [auth B]	d1p4eb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
G [auth A]	d1p4ea1	All alpha proteins	SAM domain-like	lambda integrase-like, N-terminal domain	lambda integrase-like, N-terminal domain	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
G [auth A]	d1p4ea2	Alpha and beta proteins (a+b)	DNA breaking-rejoining enzymes	DNA breaking-rejoining enzymes	Lambda integrase-like, catalytic core	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth D]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8034603	3001127	SCOP2B (2022-06-29)
J [auth D]	SCOP2B Superfamily	lambda integrase clamp domain-like	8034602	3000550	SCOP2B (2022-06-29)
I [auth C]	SCOP2B Superfamily	lambda integrase clamp domain-like	8034602	3000550	SCOP2B (2022-06-29)
I [auth C]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8034603	3001127	SCOP2B (2022-06-29)
H [auth B]	SCOP2B Superfamily	lambda integrase clamp domain-like	8034602	3000550	SCOP2B (2022-06-29)
H [auth B]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8034603	3001127	SCOP2B (2022-06-29)
G [auth A]	SCOP2 Family	lambda integrase-like, clamp domain-like	8022222	4001040	SCOP2 (2022-06-29)
G [auth A]	SCOP2 Family	Lambda integrase-like, catalytic core	8022223	4002347	SCOP2 (2022-06-29)
G [auth A]	SCOP2 Superfamily	lambda integrase clamp domain-like	8034602	3000550	SCOP2 (2022-06-29)
G [auth A]	SCOP2 Superfamily	DNA breaking-rejoining enzymes	8034603	3001127	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth D]	Topoisom_I,Topo_C_assoc	e1p4eD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
J [auth D]	UBA	e1p4eD3	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: UBA	ECOD (v294.1)
I [auth C]	Topoisom_I,Topo_C_assoc	e1p4eC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
I [auth C]	UBA	e1p4eC3	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: UBA	ECOD (v294.1)
H [auth B]	UBA	e1p4eB3	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: UBA	ECOD (v294.1)
H [auth B]	EF-hand_1, EF-hand_6, EF-hand_7	e1p4eB1	A: a/b three-layered sandwiches	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_1, EF-hand_6, EF-hand_7	ECOD (v294.1)
G [auth A]	Flp_C	e1p4eA1	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Flp_C	ECOD (v294.1)
G [auth A]	Phage_int_SAM_1	e1p4eA3	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N	T: lambda integrase-N	F: Phage_int_SAM_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth D]	3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
J [auth D]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
I [auth C]	3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
I [auth C]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
H [auth B]	3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
H [auth B]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
G [auth A]	3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
G [auth A]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth C], J [auth D]	PF05202	Recombinase Flp protein (Flp_C)	Recombinase Flp protein	-	Family
I [auth C], J [auth D]	PF03930	Recombinase Flp protein N-terminus (Flp_N)	Recombinase Flp protein N-terminus		Domain
G [auth A], H [auth B]	PF05202	Recombinase Flp protein (Flp_C)	Recombinase Flp protein	-	Family
G [auth A], H [auth B]	PF03930	Recombinase Flp protein N-terminus (Flp_N)	Recombinase Flp protein N-terminus		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth C], J [auth D]	Recombinase FLP protein	DNA binding DNA binding, bending binding nucleic acid binding double-stranded DNA binding integrase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity site-specific recombinase activity single-stranded DNA binding	nucleobase-containing compound metabolic process plasmid recombination DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-
G [auth A], H [auth B]	Recombinase FLP protein	DNA binding DNA binding, bending binding nucleic acid binding double-stranded DNA binding integrase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity site-specific recombinase activity single-stranded DNA binding	nucleobase-containing compound metabolic process plasmid recombination DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-
E [auth G], F [auth H]	33-MER	-	-	-
B [auth I], D [auth J]	5'-D(TPTPTPAPAPAPAPGPAPAPTPAPGPGPAPAPCPTPTPC)-3'	-	-	-
A [auth E], C [auth F]	5'-D(TPAPAPGPTPTPCPCPTPAPTPTP*C)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth C], J [auth D]	IPR022647	Recombinase Flp protein, N-terminal	Domain
I [auth C], J [auth D]	IPR011010	DNA breaking-rejoining enzyme, catalytic core	Homologous Superfamily
I [auth C], J [auth D]	IPR005626	Recombinase Flp protein, C-terminal	Domain
I [auth C], J [auth D]	IPR013762	Integrase-like, catalytic domain superfamily	Homologous Superfamily
G [auth A], H [auth B]	IPR022647	Recombinase Flp protein, N-terminal	Domain
G [auth A], H [auth B]	IPR011010	DNA breaking-rejoining enzyme, catalytic core	Homologous Superfamily
G [auth A], H [auth B]	IPR005626	Recombinase Flp protein, C-terminal	Domain
G [auth A], H [auth B]	IPR013762	Integrase-like, catalytic domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
I [auth C], J [auth D]	PTR	Parent Component: TYR RESID: AA0039 PSI-MOD : O4'-phospho-L-tyrosine MOD:00048

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.