1OVL | pdb_00001ovl

Crystal Structure of Nurr1 LBD

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1ovld_	All alpha proteins	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Orphan nuclear receptor NURR1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ovla_	All alpha proteins	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Orphan nuclear receptor NURR1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d1ovlf_	All alpha proteins	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Orphan nuclear receptor NURR1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d1ovle_	All alpha proteins	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Orphan nuclear receptor NURR1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1ovlc_	All alpha proteins	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Orphan nuclear receptor NURR1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1ovlb_	All alpha proteins	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	Orphan nuclear receptor NURR1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8034384	3001442	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8034384	3001442	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8034384	3001442	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8034384	3001442	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nuclear receptor ligand-binding domain	8034384	3001442	SCOP2B (2022-06-29)
B	SCOP2 Family	Nuclear receptor ligand-binding domain	8022004	4001384	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Nuclear receptor ligand-binding domain	8034384	3001442	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	3HCDH	e1ovlD1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: 3HCDH	ECOD (v295)
A	3HCDH	e1ovlA1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: 3HCDH	ECOD (v295)
F	3HCDH	e1ovlF1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: 3HCDH	ECOD (v295)
E	3HCDH	e1ovlE1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: 3HCDH	ECOD (v295)
C	3HCDH	e1ovlC1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: 3HCDH	ECOD (v295)
B	3HCDH	e1ovlB1	A: alpha arrays	X: Urease, gamma-subunit	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: 3HCDH	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
A	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
F	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
E	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
C	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)
B	1.10.565.10	Mainly Alpha	Orthogonal Bundle	Retinoid X Receptor	Retinoid X Receptor	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D	PF00104	Ligand-binding domain of nuclear hormone receptor (Hormone_recep)	Ligand-binding domain of nuclear hormone receptor	This all helical domain is involved in binding the hormone in these receptors.	Domain
B, C, E, F	PF00104	Ligand-binding domain of nuclear hormone receptor (Hormone_recep)	Ligand-binding domain of nuclear hormone receptor	This all helical domain is involved in binding the hormone in these receptors.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D	Orphan nuclear receptor NURR1 (MSE 414, 496, 511)	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding nuclear glucocorticoid receptor binding DNA-binding transcription factor binding DNA binding sequence-specific DNA binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding nuclear glucocorticoid receptor binding DNA-binding transcription factor binding DNA binding sequence-specific DNA binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein heterodimerization activity protein dimerization activity DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity nuclear retinoic acid receptor binding nuclear retinoid X receptor binding nuclear receptor activity molecular transducer activity signaling receptor activity ligand-modulated transcription factor activity beta-catenin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	cellular response to stimulus cellular response to nitrogen compound response to corticotropin-releasing hormone response to stimulus response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular response to stimulus cellular response to nitrogen compound response to corticotropin-releasing hormone response to stimulus response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to corticotropin-releasing hormone stimulus cellular response to hormone stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling canonical Wnt signaling pathway biological regulation cell communication signal transduction Wnt signaling pathway developmental process multicellular organismal process cellular developmental process nervous system development generation of neurons central nervous system neuron differentiation multicellular organism development neurogenesis central nervous system development neuron differentiation cell differentiation anatomical structure development animal gross anatomical part developmental process system development RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process negative regulation of signaling negative regulation of biological process regulation of signal transduction regulation of programmed cell death negative regulation of cell communication negative regulation of apoptotic signaling pathway negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction apoptotic signaling pathway negative regulation of apoptotic process regulation of response to stimulus regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway fat cell differentiation head development dopaminergic neuron differentiation animal organ development brain development midbrain development midbrain dopaminergic neuron differentiation neuron migration cell migration cell motility regulation of primary metabolic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen protein-containing complex transcription regulator complex cytoplasm chromatin chromosome
B, C, E, F	Orphan nuclear receptor NURR1 (MSE 496, 511)	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding nuclear glucocorticoid receptor binding DNA-binding transcription factor binding DNA binding sequence-specific DNA binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding nuclear glucocorticoid receptor binding DNA-binding transcription factor binding DNA binding sequence-specific DNA binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein heterodimerization activity protein dimerization activity DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity nuclear retinoic acid receptor binding nuclear retinoid X receptor binding nuclear receptor activity molecular transducer activity signaling receptor activity ligand-modulated transcription factor activity beta-catenin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	cellular response to stimulus cellular response to nitrogen compound response to corticotropin-releasing hormone response to stimulus response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular response to stimulus cellular response to nitrogen compound response to corticotropin-releasing hormone response to stimulus response to endogenous stimulus response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular process cellular response to corticotropin-releasing hormone stimulus cellular response to hormone stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling canonical Wnt signaling pathway biological regulation cell communication signal transduction Wnt signaling pathway developmental process multicellular organismal process cellular developmental process nervous system development generation of neurons central nervous system neuron differentiation multicellular organism development neurogenesis central nervous system development neuron differentiation cell differentiation anatomical structure development animal gross anatomical part developmental process system development RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process negative regulation of signaling negative regulation of biological process regulation of signal transduction regulation of programmed cell death negative regulation of cell communication negative regulation of apoptotic signaling pathway negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction apoptotic signaling pathway negative regulation of apoptotic process regulation of response to stimulus regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway fat cell differentiation head development dopaminergic neuron differentiation animal organ development brain development midbrain development midbrain dopaminergic neuron differentiation neuron migration cell migration cell motility regulation of primary metabolic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen protein-containing complex transcription regulator complex cytoplasm chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D	IPR003073	Nuclear receptor subfamily 4 group A member 2	Family
A, D	IPR001628	Zinc finger, nuclear hormone receptor-type	Domain
A, D	IPR001723	Nuclear hormone receptor	Family
A, D	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
A, D	IPR003070	Nuclear receptor subfamily 4 group A member 1-3	Family
A, D	IPR000536	Nuclear hormone receptor, ligand-binding domain	Domain
A, D	IPR035500	Nuclear hormone receptor-like domain superfamily	Homologous Superfamily
B, C, E, F	IPR003073	Nuclear receptor subfamily 4 group A member 2	Family
B, C, E, F	IPR001628	Zinc finger, nuclear hormone receptor-type	Domain
B, C, E, F	IPR001723	Nuclear hormone receptor	Family
B, C, E, F	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
B, C, E, F	IPR003070	Nuclear receptor subfamily 4 group A member 1-3	Family
B, C, E, F	IPR000536	Nuclear hormone receptor, ligand-binding domain	Domain
B, C, E, F	IPR035500	Nuclear hormone receptor-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, D	: P43354	Parkinson disease psoriatic arthritis juvenile idiopathic arthritis Arsenic Poisoning bipolar disorder colorectal cancer exocrine pancreatic carcinoma rheumatoid arthritis glioblastoma skin disease interstitial lung disease ulcerative colitis late-onset Parkinson disease acute myeloid leukemia lymphoplasmacytic lymphoma Parkinson disease psoriatic arthritis juvenile idiopathic arthritis Arsenic Poisoning bipolar disorder colorectal cancer exocrine pancreatic carcinoma rheumatoid arthritis glioblastoma skin disease interstitial lung disease ulcerative colitis late-onset Parkinson disease acute myeloid leukemia lymphoplasmacytic lymphoma malignant glioma nasopharyngeal carcinoma B-cell chronic lymphocytic leukemia breast cancer non-small cell lung carcinoma colorectal carcinoma endogenous depression psoriasis gastric cancer schizophrenia hepatocellular carcinoma transitional cell carcinoma lung adenocarcinoma adrenal cortex carcinoma major depressive disorder malignant pancreatic neoplasm astrocytic tumor Barrett esophagus nephrosclerosis cocaine abuse oligodendroglioma pituitary cancer esophageal adenocarcinoma gastric carcinoma sinusitis interstitial cystitis tuberculosis large cell medulloblastoma lung cancer malignant ependymoma medulloblastoma atypical teratoid rhabdoid tumor osteosarcoma primitive neuroectodermal tumor
B, C, E, F	: P43354	Parkinson disease psoriatic arthritis juvenile idiopathic arthritis Arsenic Poisoning bipolar disorder colorectal cancer exocrine pancreatic carcinoma rheumatoid arthritis glioblastoma skin disease interstitial lung disease ulcerative colitis late-onset Parkinson disease acute myeloid leukemia lymphoplasmacytic lymphoma Parkinson disease psoriatic arthritis juvenile idiopathic arthritis Arsenic Poisoning bipolar disorder colorectal cancer exocrine pancreatic carcinoma rheumatoid arthritis glioblastoma skin disease interstitial lung disease ulcerative colitis late-onset Parkinson disease acute myeloid leukemia lymphoplasmacytic lymphoma malignant glioma nasopharyngeal carcinoma B-cell chronic lymphocytic leukemia breast cancer non-small cell lung carcinoma colorectal carcinoma endogenous depression psoriasis gastric cancer schizophrenia hepatocellular carcinoma transitional cell carcinoma lung adenocarcinoma adrenal cortex carcinoma major depressive disorder malignant pancreatic neoplasm astrocytic tumor Barrett esophagus nephrosclerosis cocaine abuse oligodendroglioma pituitary cancer esophageal adenocarcinoma gastric carcinoma sinusitis interstitial cystitis tuberculosis large cell medulloblastoma lung cancer malignant ependymoma medulloblastoma atypical teratoid rhabdoid tumor osteosarcoma primitive neuroectodermal tumor

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.