Annotations: 1OM9

Structure of the GGA1-appendage in complex with the p56 binding peptide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth B]	d1om9b_	All beta proteins	Immunoglobulin-like beta-sandwich	Clathrin adaptor appendage domain	gamma-adaptin C-terminal appendage domain-like	ADP-ribosylation factor binding protein Gga1 domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1om9a_	All beta proteins	Immunoglobulin-like beta-sandwich	Clathrin adaptor appendage domain	gamma-adaptin C-terminal appendage domain-like	ADP-ribosylation factor binding protein Gga1 domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth B]	SCOP2B Superfamily	Clathrin adaptor appendage domain	8055297	3002052	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Clathrin adaptor appendage domain	8055297	3002052	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth B]	Copper-bind	e1om9B1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
A	Copper-bind	e1om9A1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth B]	2.60.40.1230	Mainly Beta	Sandwich	Immunoglobulin-like	Gamma-adaptin ear (GAE) domain	CATH (4.3.0)
A	2.60.40.1230	Mainly Beta	Sandwich	Immunoglobulin-like	Gamma-adaptin ear (GAE) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B]	PF02883	Adaptin C-terminal domain (Alpha_adaptinC2)	Adaptin C-terminal domain	Alpha adaptin is a heterotetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This ig-fold domain is found in alpha, beta and ...	Alpha adaptin is a heterotetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This ig-fold domain is found in alpha, beta and gamma adaptins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth P], D [auth Q]	15-mer peptide fragment of p56	identical protein binding protein binding binding	cellular localization post-Golgi vesicle-mediated transport transport intracellular transport lysosomal transport establishment of localization vesicle-mediated transport localization Golgi to vacuole transport intercellular transport cytosolic transport establishment of localization in cell vacuolar transport cellular process cellular localization post-Golgi vesicle-mediated transport transport intracellular transport lysosomal transport establishment of localization vesicle-mediated transport localization Golgi to vacuole transport intercellular transport cytosolic transport establishment of localization in cell vacuolar transport cellular process Golgi to lysosome transport Golgi vesicle transport establishment of protein localization protein transport macromolecule localization intracellular protein localization	intracellular organelle microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane membrane-bounded organelle intracellular organelle microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane membrane-bounded organelle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system trans-Golgi network nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen acrosomal vesicle intracellular vesicle cytoplasmic vesicle secretory granule secretory vesicle vesicle
A, C [auth B]	ADP-ribosylation factor binding protein GGA1	ion binding binding anion binding phosphatidylinositol binding small molecule binding small GTPase binding protein binding enzyme binding GTPase binding ubiquitin binding ubiquitin-like protein binding	Golgi to plasma membrane transport establishment of protein localization cellular localization protein localization to cell periphery post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane protein localization to plasma membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane Golgi to plasma membrane transport establishment of protein localization cellular localization protein localization to cell periphery post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane protein localization to plasma membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization protein transport macromolecule localization cellular process intracellular protein localization Golgi vesicle transport protein localization to cell surface catabolic process metabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process regulation of cellular process positive regulation of protein metabolic process positive regulation of biological process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biological process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of metabolic process regulation of protein catabolic process intracellular transport establishment of localization in cell intracellular protein transport endosomal transport intercellular transport cytosolic transport retrograde transport, endosome to Golgi protein localization to cilium protein localization to ciliary membrane protein localization to organelle	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex early endosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network endosome membrane early endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth P], D [auth Q]	IPR034592	Coiled-coil domain-containing protein 91	Family
A, C [auth B]	IPR002014	VHS domain	Domain
A, C [auth B]	IPR008942	ENTH/VHS	Homologous Superfamily
A, C [auth B]	IPR041198	N-terminal extension of GAT domain	Domain
A, C [auth B]	IPR008153	Gamma-adaptin ear (GAE) domain	Domain
A, C [auth B]	IPR038425	GAT domain superfamily	Homologous Superfamily
A, C [auth B]	IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Homologous Superfamily
A, C [auth B]	IPR004152	GAT domain	Domain
A, C [auth B]	IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Domain
A, C [auth B]	IPR027422	ADP-ribosylation factor-binding protein GGA1-3	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth P], D [auth Q]	: Q7Z6B0	substance-related disorder breast carcinoma drug dependence estrogen-receptor negative breast cancer Organic Mental Disorders, Substance-Induced ovarian cancer progressive supranuclear palsy substance dependence chronic obstructive pulmonary disease malignant mesothelioma ossification of the posterior longitudinal ligament of the spine plasma cell myeloma substance abuse oligodendroglioma osteoarthritis
A, C [auth B]	: Q9UJY5	astrocytic tumor medulloblastoma ovarian cancer sarcoidosis malignant ependymoma oligodendroglioma primitive neuroectodermal tumor X-linked mixed deafness with perilymphatic gusher Malignant neoplasm of breast osteosarcoma psoriasis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B [auth P], C [auth B], D [auth Q]	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Immunoglobulin-like superfamily (E set)	Gamma-adaptin C-terminal appendage domain-like

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