1O7L | pdb_00001o7l

Molybdate-activated form of ModE from Escherichia coli

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1o7ld1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	N-terminal domain of molybdate-dependent transcriptional regulator ModE	N-terminal domain of molybdate-dependent transcriptional regulator ModE	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
D	d1o7ld2	All beta proteins	OB-fold	MOP-like	BiMOP, duplicated molybdate-binding domain	C-terminal domain of molybdate-dependent transcriptional regulator ModE	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d1o7lc1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	N-terminal domain of molybdate-dependent transcriptional regulator ModE	N-terminal domain of molybdate-dependent transcriptional regulator ModE	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d1o7lc2	All beta proteins	OB-fold	MOP-like	BiMOP, duplicated molybdate-binding domain	C-terminal domain of molybdate-dependent transcriptional regulator ModE	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d1o7lb1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	N-terminal domain of molybdate-dependent transcriptional regulator ModE	N-terminal domain of molybdate-dependent transcriptional regulator ModE	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d1o7lb2	All beta proteins	OB-fold	MOP-like	BiMOP, duplicated molybdate-binding domain	C-terminal domain of molybdate-dependent transcriptional regulator ModE	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d1o7la1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	N-terminal domain of molybdate-dependent transcriptional regulator ModE	N-terminal domain of molybdate-dependent transcriptional regulator ModE	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d1o7la2	All beta proteins	OB-fold	MOP-like	BiMOP, duplicated molybdate-binding domain	C-terminal domain of molybdate-dependent transcriptional regulator ModE	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Winged helix DNA-binding domain	8002811	3000034	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	MOP-like	8002814	3000099	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	MOP-like	8091367	3000099	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Winged helix DNA-binding domain	8002811	3000034	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MOP-like	8091367	3000099	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MOP-like	8002814	3000099	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Winged helix DNA-binding domain	8002811	3000034	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MOP-like	8091367	3000099	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MOP-like	8002814	3000099	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MOP-like	8091367	3000099	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8002811	3000034	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MOP-like	8002814	3000099	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Cpn10	e1o7lD1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.1)
D	Pox_D5	e1o7lD3	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Pox_D5	ECOD (v294.1)
C	Cpn10	e1o7lC1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.1)
C	Pox_D5	e1o7lC3	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Pox_D5	ECOD (v294.1)
B	Cpn10	e1o7lB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.1)
B	Pox_D5	e1o7lB3	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Pox_D5	ECOD (v294.1)
A	Cpn10	e1o7lA1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.1)
A	Pox_D5	e1o7lA3	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Pox_D5	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
D	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)
C	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
C	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)
B	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
B	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
A	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03459	TOBE domain (TOBE)	TOBE domain	The TOBE domain [1] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (eg Swiss:P46930) and sulfate (Swiss: ...	The TOBE domain [1] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (eg Swiss:P46930) and sulfate (Swiss:P16676). Found in ABC transporters immediately after the ATPase domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	TRANSCRIPTIONAL REGULATOR MODE	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding cation binding transition metal ion binding molybdenum ion binding ion binding metal ion binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding cation binding transition metal ion binding molybdenum ion binding ion binding metal ion binding small molecule binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process localization transport establishment of localization molybdate ion transport inorganic anion transport positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription initiation DNA-templated transcription initiation negative regulation of DNA-templated transcription initiation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ModE complex transcription regulator complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR004606	Molybdenum-pterin binding domain	Domain
A, B, C, D	IPR051815	Molybdate-responsive transcriptional regulator	Family
A, B, C, D	IPR008995	Molybdate/tungstate binding, C-terminal	Homologous Superfamily
A, B, C, D	IPR016462	Molybdate-dependent transcriptional regulator ModE	Family
A, B, C, D	IPR003725	Molybdenum-binding protein ModE, N-terminal	Domain
A, B, C, D	IPR005116	Transport-associated OB, type 1	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.