1N5X | pdb_00001n5x

Xanthine Dehydrogenase from Bovine Milk with Inhibitor TEI-6720 Bound


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1n5xa1 All alpha proteins CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like Xanthine oxidase, domain 2 (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ad1n5xa2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin domains from multidomain proteins Xanthine oxidase, N-terminal domain (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ad1n5xa3 Alpha and beta proteins (a+b) alpha/beta-Hammerhead CO dehydrogenase molybdoprotein N-domain-like CO dehydrogenase molybdoprotein N-domain-like Xanthine oxidase, domain 5 (?) (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ad1n5xa4 Alpha and beta proteins (a+b) CO dehydrogenase flavoprotein C-domain-like CO dehydrogenase flavoprotein C-terminal domain-like CO dehydrogenase flavoprotein C-terminal domain-like Xanthine oxidase, domain 4 (?) (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ad1n5xa5 Alpha and beta proteins (a+b) Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Xanthine oxidase, C-terminal domain (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ad1n5xa6 Alpha and beta proteins (a+b) FAD-binding/transporter-associated domain-like FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein N-terminal domain-like Xanthine oxidase, domain 3 (?) (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1n5xb1 All alpha proteins CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like Xanthine oxidase, domain 2 (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1n5xb2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin domains from multidomain proteins Xanthine oxidase, N-terminal domain (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1n5xb3 Alpha and beta proteins (a+b) alpha/beta-Hammerhead CO dehydrogenase molybdoprotein N-domain-like CO dehydrogenase molybdoprotein N-domain-like Xanthine oxidase, domain 5 (?) (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1n5xb4 Alpha and beta proteins (a+b) CO dehydrogenase flavoprotein C-domain-like CO dehydrogenase flavoprotein C-terminal domain-like CO dehydrogenase flavoprotein C-terminal domain-like Xanthine oxidase, domain 4 (?) (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1n5xb5 Alpha and beta proteins (a+b) Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Xanthine oxidase, C-terminal domain (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1n5xb6 Alpha and beta proteins (a+b) FAD-binding/transporter-associated domain-like FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein N-terminal domain-like Xanthine oxidase, domain 3 (?) (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCO dehydrogenase molybdoprotein N-domain-like 8043059 3000847 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFAD-binding/transporter-associated domain-like 8043065 3000913 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMolybdenum cofactor-binding domain 8043062 3000625 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCO dehydrogenase ISP C-domain like 8043057 3000439 SCOP2B (2022-06-29)
ASCOP2B Superfamily2Fe-2S ferredoxin-like 8043058 3000113 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCO dehydrogenase flavoprotein C-terminal domain-like 8043061 3001921 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCO dehydrogenase molybdoprotein N-domain-like 8043059 3000847 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCO dehydrogenase ISP C-domain like 8043057 3000439 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCO dehydrogenase flavoprotein C-terminal domain-like 8043061 3001921 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMolybdenum cofactor-binding domain 8043062 3000625 SCOP2B (2022-06-29)
BSCOP2B Superfamily2Fe-2S ferredoxin-like 8043058 3000113 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFAD-binding/transporter-associated domain-like 8043065 3000913 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APAP2e1n5xA1 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF: PAP2ECOD (v294.1)
AS4e1n5xA3 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: S4ECOD (v294.1)
AYceM-like_Ce1n5xA4 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: YceM-like_CECOD (v294.1)
ALRR_6,LRR_RI_cappinge1n5xA5 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: LRR_6,LRR_RI_cappingECOD (v294.1)
ABiotin_carb_Ce1n5xA6 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: Biotin_carb_CECOD (v294.1)
ADctPe1n5xA7 A: a/b three-layered sandwichesX: omega toxin-likeH: omega toxin-relatedT: omega toxin-relatedF: DctPECOD (v294.1)
BPAP2e1n5xB1 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: Flavivirus capsid protein CT: Flavivirus capsid protein CF: PAP2ECOD (v294.1)
BS4e1n5xB3 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: S4ECOD (v294.1)
BYceM-like_Ce1n5xB4 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: YceM-like_CECOD (v294.1)
BLRR_6,LRR_RI_cappinge1n5xB5 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: LRR_6,LRR_RI_cappingECOD (v294.1)
BBiotin_carb_Ce1n5xB6 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: Biotin_carb_CECOD (v294.1)
BDctPe1n5xB7 A: a/b three-layered sandwichesX: omega toxin-likeH: omega toxin-relatedT: omega toxin-relatedF: DctPECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00941FAD binding domain in molybdopterin dehydrogenase (FAD_binding_5)FAD binding domain in molybdopterin dehydrogenaseDomain
A, B
PF01799[2Fe-2S] binding domain (Fer2_2)[2Fe-2S] binding domainDomain
A, B
PF01315Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain (Ald_Xan_dh_C)Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domainDomain
A, B
PF20256Molybdopterin cofactor-binding domain (MoCoBD_2)Molybdopterin cofactor-binding domainDomain
A, B
PF03450CO dehydrogenase flavoprotein C-terminal domain (CO_deh_flav_C)CO dehydrogenase flavoprotein C-terminal domainDomain
A, B
PF02738Molybdopterin cofactor-binding domain (MoCoBD_1)Molybdopterin cofactor-binding domainDomain
A, B
PF001112Fe-2S iron-sulfur cluster binding domain (Fer2)2Fe-2S iron-sulfur cluster binding domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Xanthine Dehydrogenase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR016167FAD-binding, type PCMH, subdomain 1Homologous Superfamily
A, B
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
A, B
IPR0060582Fe-2S ferredoxin, iron-sulphur binding siteBinding Site
A, B
IPR046867Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domainDomain
A, B
IPR002888[2Fe-2S]-bindingDomain
A, B
IPR036318FAD-binding, type PCMH-like superfamilyHomologous Superfamily
A, B
IPR016208Aldehyde oxidase/xanthine dehydrogenase-likeFamily
A, B
IPR012675Beta-grasp domain superfamilyHomologous Superfamily
A, B
IPR036683CO dehydrogenase flavoprotein, C-terminal domain superfamilyHomologous Superfamily
A, B
IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
A, B
IPR000674Aldehyde oxidase/xanthine dehydrogenase, a/b hammerheadDomain
A, B
IPR022407Oxidoreductase, molybdopterin binding siteBinding Site
A, B
IPR036856Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamilyHomologous Superfamily
A, B
IPR037165Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamilyHomologous Superfamily
A, B
IPR016166FAD-binding domain, PCMH-typeDomain
A, B
IPR002346Molybdopterin dehydrogenase, FAD-bindingDomain
A, B
IPR014307Xanthine dehydrogenase, small subunitDomain
A, B
IPR016169FAD-binding, type PCMH, subdomain 2Homologous Superfamily
A, B
IPR036884[2Fe-2S]-binding domain superfamilyHomologous Superfamily
A, B
IPR008274Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domainDomain
A, B
IPR005107CO dehydrogenase flavoprotein, C-terminalDomain