1M6X | pdb_00001m6x

Flpe-Holliday Junction Complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J [auth D]	d1m6xd1	All alpha proteins	SAM domain-like	lambda integrase-like, N-terminal domain	lambda integrase-like, N-terminal domain	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
J [auth D]	d1m6xd2	Alpha and beta proteins (a+b)	DNA breaking-rejoining enzymes	DNA breaking-rejoining enzymes	Lambda integrase-like, catalytic core	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
I [auth C]	d1m6xc1	All alpha proteins	SAM domain-like	lambda integrase-like, N-terminal domain	lambda integrase-like, N-terminal domain	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
I [auth C]	d1m6xc2	Alpha and beta proteins (a+b)	DNA breaking-rejoining enzymes	DNA breaking-rejoining enzymes	Lambda integrase-like, catalytic core	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
G [auth A]	d1m6xa1	All alpha proteins	SAM domain-like	lambda integrase-like, N-terminal domain	lambda integrase-like, N-terminal domain	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
G [auth A]	d1m6xa2	Alpha and beta proteins (a+b)	DNA breaking-rejoining enzymes	DNA breaking-rejoining enzymes	Lambda integrase-like, catalytic core	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
H [auth B]	d1m6xb1	All alpha proteins	SAM domain-like	lambda integrase-like, N-terminal domain	lambda integrase-like, N-terminal domain	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
H [auth B]	d1m6xb2	Alpha and beta proteins (a+b)	DNA breaking-rejoining enzymes	DNA breaking-rejoining enzymes	Lambda integrase-like, catalytic core	Flp recombinase	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth D]	SCOP2B Superfamily	lambda integrase clamp domain-like	8034602	3000550	SCOP2B (2022-06-29)
J [auth D]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8034603	3001127	SCOP2B (2022-06-29)
I [auth C]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8034603	3001127	SCOP2B (2022-06-29)
I [auth C]	SCOP2B Superfamily	lambda integrase clamp domain-like	8034602	3000550	SCOP2B (2022-06-29)
G [auth A]	SCOP2B Superfamily	lambda integrase clamp domain-like	8034602	3000550	SCOP2B (2022-06-29)
G [auth A]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8034603	3001127	SCOP2B (2022-06-29)
H [auth B]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8034603	3001127	SCOP2B (2022-06-29)
H [auth B]	SCOP2B Superfamily	lambda integrase clamp domain-like	8034602	3000550	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth D]		e1m6xD1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Topoisom_I,Topo_C_assoc	F:	ECOD (20:10:01)
J [auth D]		e1m6xD3	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: EF-hand_1,S_100	F:	ECOD (20:10:01)
I [auth C]		e1m6xC1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Topoisom_I,Topo_C_assoc	F:	ECOD (20:10:01)
I [auth C]		e1m6xC3	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: EF-hand_1,S_100	F:	ECOD (20:10:01)
G [auth A]		e1m6xA1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Topoisom_I,Topo_C_assoc	F:	ECOD (20:10:01)
G [auth A]		e1m6xA3	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: EF-hand_1,S_100	F:	ECOD (20:10:01)
H [auth B]		e1m6xB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Topoisom_I,Topo_C_assoc	F:	ECOD (20:10:01)
H [auth B]		e1m6xB3	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: EF-hand_1,S_100	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth D]	3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
J [auth D]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
I [auth C]	3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
I [auth C]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
G [auth A]	3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
G [auth A]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
H [auth B]	3.30.300.80	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)
H [auth B]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth C], J [auth D]	PF05202	Recombinase Flp protein (Flp_C)	Recombinase Flp protein	-	Family
I [auth C], J [auth D]	PF03930	Recombinase Flp protein N-terminus (Flp_N)	Recombinase Flp protein N-terminus		Domain
G [auth A], H [auth B]	PF05202	Recombinase Flp protein (Flp_C)	Recombinase Flp protein	-	Family
G [auth A], H [auth B]	PF03930	Recombinase Flp protein N-terminus (Flp_N)	Recombinase Flp protein N-terminus		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth G], F [auth H]	Symmetrized FRT site	-	-	-
I [auth C], J [auth D]	Flp recombinase	DNA binding DNA binding, bending binding nucleic acid binding double-stranded DNA binding integrase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity site-specific recombinase activity single-stranded DNA binding	nucleobase-containing compound metabolic process plasmid recombination DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-
G [auth A], H [auth B]	Flp recombinase	DNA binding DNA binding, bending binding nucleic acid binding double-stranded DNA binding integrase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity site-specific recombinase activity single-stranded DNA binding	nucleobase-containing compound metabolic process plasmid recombination DNA recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-
B [auth I], D [auth J]	Symmetrized FRT site	-	-	-
A [auth E], C [auth F]	Symmetrized FRT site	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth C], J [auth D]	IPR022647	Recombinase Flp protein, N-terminal	Domain
I [auth C], J [auth D]	IPR011010	DNA breaking-rejoining enzyme, catalytic core	Homologous Superfamily
I [auth C], J [auth D]	IPR005626	Recombinase Flp protein, C-terminal	Domain
I [auth C], J [auth D]	IPR013762	Integrase-like, catalytic domain superfamily	Homologous Superfamily
G [auth A], H [auth B]	IPR022647	Recombinase Flp protein, N-terminal	Domain
G [auth A], H [auth B]	IPR011010	DNA breaking-rejoining enzyme, catalytic core	Homologous Superfamily
G [auth A], H [auth B]	IPR005626	Recombinase Flp protein, C-terminal	Domain
G [auth A], H [auth B]	IPR013762	Integrase-like, catalytic domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
I [auth C], J [auth D]	PTR	Parent Component: TYR RESID: AA0039 PSI-MOD : O4'-phospho-L-tyrosine MOD:00048

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.