1LSH

LIPID-PROTEIN INTERACTIONS IN LIPOVITELLIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1lsha1	All alpha proteins	alpha-alpha superhelix	Lipovitellin-phosvitin complex, superhelical domain	Lipovitellin-phosvitin complex, superhelical domain	Lipovitellin-phosvitin complex, superhelical domain	(Ichthyomyzon unicuspis ) [TaxId: 30308 ],	SCOPe (2.08)
A	d1lsha2	Membrane and cell surface proteins and peptides	Lipovitellin-phosvitin complex	beta-sheet shell regions	Lipovitellin-phosvitin complex	beta-sheet shell regions	(Ichthyomyzon unicuspis ) [TaxId: 30308 ],	SCOPe (2.08)
B	d1lshb_	Membrane and cell surface proteins and peptides	Lipovitellin-phosvitin complex	beta-sheet shell regions	Lipovitellin-phosvitin complex	beta-sheet shell regions	(Ichthyomyzon unicuspis ) [TaxId: 30308 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Lipovitellin-phosvitin complex superhelical domain	8029076	4001323	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Lipovitellin-phosvitin complex superhelical domain	8041455	3001293	SCOP2 (2022-06-29)
B	SCOP2 Family	Lipovitellin-phosvitin complex beta-sheet shell regions	8029077	4003109	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Lipovitellin-phosvitin complex beta-sheet shell regions	8041456	3000269	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Vitellogenin_N_1st	e1lshA1	A: beta meanders	X: Lipovitellin-phosvitin complex	H: Lipovitellin LV-1N (From Topology)	T: Lipovitellin LV-1N	F: Vitellogenin_N_1st	ECOD (1.6)
A	DUF1943	e1lshA2	A: beta meanders	X: Lipovitellin-phosvitin complex	H: Lipovitellin LV-1C (From Topology)	T: Lipovitellin LV-1C	F: DUF1943	ECOD (1.6)
A	Vitellogenin_N_2nd	e1lshA3	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Vitellogenin_N_2nd	ECOD (1.6)
B	DUF1944	e1lshB1	A: beta meanders	X: Lipovitellin-phosvitin complex	H: Lipovitellin LV-2 (From Topology)	T: Lipovitellin LV-2	F: DUF1944	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.230.10	Mainly Beta	Roll	Lipovitellin-phosvitin complex	beta-sheet shell regions	CATH (4.3.0)
A	1.25.10.20	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Vitellinogen, superhelical	CATH (4.3.0)
A	2.20.50.20	Mainly Beta	Single Sheet	Outer Surface Protein A	domain 2	CATH (4.3.0)
A	2.20.80.10	Mainly Beta	Single Sheet	Lipovitellin-phosvitin complex, chain A, domain 4	Lipovitellin-phosvitin complex, chain A, domain 4	CATH (4.3.0)
B	2.20.90.10	Mainly Beta	Single Sheet	Lipovitellin-phosvitin complex	beta-sheet shell regions	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09172	Vitellinogen, open beta-sheet (Vit_open_b-sht)	Vitellinogen, open beta-sheet	This entry represents the open beta-sheet domain found in vitellinogen, which generally corresponds to a domain within the lipovitellin-1 peptide product. This domain adopts a structure consisting of several large open beta-sheets [1].	Domain
A	PF01347	Lipoprotein amino terminal region (Vitellogenin_N)	Lipoprotein amino terminal region	-	Repeat
B	PF09175	Vitellinogen, beta-sheet shell (Vit_b-sht_shell)	Vitellinogen, beta-sheet shell	This entry represents the beta-sheet shell domain found in vitellinogen, which generally corresponds to the lipovitellin-2 peptide product. This domain consists of several large open beta-sheets [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	LIPOVITELLIN (LV-1N, LV-1C)	nutrient reservoir activity lipid transporter activity transporter activity	-	-
B	LIPOVITELLIN (LV-2)	nutrient reservoir activity lipid transporter activity transporter activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011030	Lipovitellin-phosvitin complex, superhelical domain	Homologous Superfamily
A	IPR015255	Vitellinogen, open beta-sheet	Domain
A	IPR001747	Vitellogenin, N-terminal	Domain
A	IPR015819	Lipid transport protein, beta-sheet shell	Homologous Superfamily
A	IPR015817	Vitellinogen, open beta-sheet, subdomain 1	Homologous Superfamily
A	IPR015816	Vitellinogen, beta-sheet N-terminal	Homologous Superfamily
A	IPR037088	Vitellinogen, beta-sheet shell domain superfamily	Homologous Superfamily
A	IPR015258	Vitellinogen, beta-sheet shell	Domain
A	IPR001846	von Willebrand factor, type D domain	Domain
B	IPR011030	Lipovitellin-phosvitin complex, superhelical domain	Homologous Superfamily
B	IPR015255	Vitellinogen, open beta-sheet	Domain
B	IPR001747	Vitellogenin, N-terminal	Domain
B	IPR015819	Lipid transport protein, beta-sheet shell	Homologous Superfamily
B	IPR015817	Vitellinogen, open beta-sheet, subdomain 1	Homologous Superfamily
B	IPR015816	Vitellinogen, beta-sheet N-terminal	Homologous Superfamily
B	IPR037088	Vitellinogen, beta-sheet shell domain superfamily	Homologous Superfamily
B	IPR015258	Vitellinogen, beta-sheet shell	Domain
B	IPR001846	von Willebrand factor, type D domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Monotopic/peripheral	Alpha + Beta monotopic/peripheral	Apolipoprotein of LDL particles	Vitellogenin

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	PCA	Parent Component: GLN RESID: AA0031 PSI-MOD : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.