1LAJ | pdb_00001laj

The Structure of Tomato Aspermy Virus by X-Ray Crystallography

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth C]	d1lajc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Tomato aspermy virus ) [TaxId: 12315 ],	SCOPe (2.08)
C [auth B]	d1lajb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Tomato aspermy virus ) [TaxId: 12315 ],	SCOPe (2.08)
B [auth A]	d1laja_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Tomato aspermy virus ) [TaxId: 12315 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth C]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8042957	3000918	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8042957	3000918	SCOP2B (2022-06-29)
B [auth A]	SCOP2 Family	Bromoviridae-like VP	8030578	4003474	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8042957	3000918	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	Cucumo_coat	e1lajC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Cucumo_coat	ECOD (1.6)
C [auth B]	Cucumo_coat	e1lajB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Cucumo_coat	ECOD (1.6)
B [auth A]	Cucumo_coat	e1lajA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Cucumo_coat	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth C]	2.60.120.530	Mainly Beta	Sandwich	Jelly Rolls	Cucumovirus coat protein, subunit A	CATH (4.3.0)
C [auth B]	2.60.120.530	Mainly Beta	Sandwich	Jelly Rolls	Cucumovirus coat protein, subunit A	CATH (4.3.0)
B [auth A]	2.60.120.530	Mainly Beta	Sandwich	Jelly Rolls	Cucumovirus coat protein, subunit A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], C [auth B], D [auth C]	PF00760	Cucumovirus coat protein (Cucumo_coat)	Cucumovirus coat protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A], C [auth B], D [auth C]	capsid protein	structural molecule activity RNA binding binding nucleic acid binding	-	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component protein-containing complex ribonucleoprotein complex viral nucleocapsid
A [auth R]	5'-R(APAP*A)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], C [auth B], D [auth C]	IPR037137	Cucumovirus coat protein, subunit A superfamily	Homologous Superfamily
B [auth A], C [auth B], D [auth C]	IPR000247	Cucumovirus coat protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.