1LAJ | pdb_00001laj

The Structure of Tomato Aspermy Virus by X-Ray Crystallography

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth C]	d1lajc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Tomato aspermy virus ) [TaxId: 12315 ],	SCOPe (2.08)
C [auth B]	d1lajb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Tomato aspermy virus ) [TaxId: 12315 ],	SCOPe (2.08)
B [auth A]	d1laja_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	Cucumovirus coat protein	(Tomato aspermy virus ) [TaxId: 12315 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth C]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8042957	3000918	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8042957	3000918	SCOP2B (2022-06-29)
B [auth A]	SCOP2 Family	Bromoviridae-like VP	8030578	4003474	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8042957	3000918	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	TNF	e1lajC1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: TNF	ECOD (v294.1)
C [auth B]	TNF	e1lajB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: TNF	ECOD (v294.1)
B [auth A]	TNF	e1lajA1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: TNF	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth C]	2.60.120.530	Mainly Beta	Sandwich	Jelly Rolls	Cucumovirus coat protein, subunit A	CATH (4.3.0)
C [auth B]	2.60.120.530	Mainly Beta	Sandwich	Jelly Rolls	Cucumovirus coat protein, subunit A	CATH (4.3.0)
B [auth A]	2.60.120.530	Mainly Beta	Sandwich	Jelly Rolls	Cucumovirus coat protein, subunit A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], C [auth B], D [auth C]	PF00760	Cucumovirus coat protein (Cucumo_coat)	Cucumovirus coat protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A], C [auth B], D [auth C]	capsid protein	structural molecule activity RNA binding binding nucleic acid binding	-	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component protein-containing complex ribonucleoprotein complex viral nucleocapsid
A [auth R]	5'-R(APAP*A)-3'	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], C [auth B], D [auth C]	IPR037137	Cucumovirus coat protein, subunit A superfamily	Homologous Superfamily
B [auth A], C [auth B], D [auth C]	IPR000247	Cucumovirus coat protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.