1J8B | pdb_00001j8b

Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1j8ba_	Alpha and beta proteins (a+b)	YbaB-like	YbaB-like	YbaB-like	Hypothetical protein HI0442	(Haemophilus influenzae Rd KW20 ) [TaxId: 71421 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YbaB-like	8030254	4003186	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YbaB-like	8042633	3000386	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	YbaB_DNA_bd	e1j8bA1	A: a+b two layers	X: Ribonuclease PH domain 2-like	H: YbaB (From Topology)	T: YbaB	F: YbaB_DNA_bd	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1310.10	Alpha Beta	2-Layer Sandwich	Ybab	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02575	YbaB/EbfC DNA-binding family (YbaB_DNA_bd)	YbaB/EbfC DNA-binding family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	YbaB	DNA binding binding nucleic acid binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle bacterial nucleoid organelle membraneless organelle intracellular membraneless organelle nucleoid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR004401	Nucleoid-associated protein YbaB/EbfC	Family
A	IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.