1H6E | pdb_00001h6e

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH CTLA-4 INTERNALIZATION PEPTIDE TTGVYVKMPPT

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1h6ea_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	second domain of mu2 adaptin subunit (ap50) of ap2 adaptor	8023950	4002088	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	mu adaptin domain-like	8036329	3000810	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1h6eA1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Ldl_recept_b	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.1170	Mainly Beta	Sandwich	Immunoglobulin-like	Mu homology domain, subdomain B	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth P]	CYTOTOXIC T-LYMPHOCYTE PROTEIN 4	molecular sequestering activity receptor decoy activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process negative regulation of lymphocyte proliferation multicellular organismal process regulation of cellular process regulation of leukocyte activation negative regulation of biological process regulation of cell activation lymphocyte activation negative regulation of lymphocyte activation cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process negative regulation of lymphocyte proliferation multicellular organismal process regulation of cellular process regulation of leukocyte activation negative regulation of biological process regulation of cell activation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte activation negative regulation of mononuclear cell proliferation negative regulation of leukocyte proliferation regulation of B cell proliferation lymphocyte proliferation regulation of B cell activation negative regulation of cellular process regulation of immune system process regulation of multicellular organismal process negative regulation of B cell activation regulation of lymphocyte proliferation regulation of leukocyte proliferation regulation of biological process negative regulation of cell population proliferation cell population proliferation B cell activation biological regulation cell activation B cell proliferation negative regulation of B cell proliferation negative regulation of cell activation negative regulation of immune system process regulation of cell population proliferation mononuclear cell proliferation immune system process regulation of mononuclear cell proliferation negative regulation of multicellular organismal process negative regulation of leukocyte activation regulation of lymphocyte activation immune response-regulating cell surface receptor signaling pathway signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response signal transduction positive regulation of immune system process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response B cell receptor signaling pathway regulation of response to stimulus regulation of immune response antigen receptor-mediated signaling pathway activation of immune response T cell receptor signaling pathway negative regulation of signaling regulation of signal transduction regulation of antigen receptor-mediated signaling pathway negative regulation of antigen receptor-mediated signaling pathway negative regulation of cell communication regulation of signaling negative regulation of response to stimulus regulation of T cell receptor signaling pathway negative regulation of signal transduction negative regulation of T cell receptor signaling pathway regulation of cell communication adaptive immune response positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process negative regulation of T cell proliferation negative regulation of cell adhesion T cell activation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion leukocyte cell-cell adhesion cell adhesion cell-cell adhesion regulation of cell-cell adhesion T cell proliferation regulation of cell adhesion regulation of T cell activation regulation of T cell proliferation regulation of leukocyte differentiation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation regulation of cell development multicellular organism development negative regulation of T cell differentiation cell differentiation anatomical structure development T cell differentiation negative regulation of hemopoiesis developmental process negative regulation of leukocyte differentiation negative regulation of lymphocyte differentiation leukocyte differentiation cellular developmental process regulation of developmental process cell development regulation of T cell differentiation negative regulation of regulatory T cell differentiation negative regulation of cell differentiation regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis negative regulation of developmental process regulation of regulatory T cell differentiation negative regulation of cell development regulatory T cell differentiation regulation of hemopoiesis	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system perinuclear region of cytoplasm intracellular vesicle clathrin-coated endocytic vesicle cytoplasmic vesicle clathrin-coated vesicle coated vesicle vesicle endocytic vesicle protein-containing complex protein complex involved in cell adhesion
A	CLATHRIN COAT ASSEMBLY PROTEIN AP50	signal sequence binding binding peptide binding protein binding transmembrane transporter binding lipid binding cargo adaptor activity protein-macromolecule adaptor activity molecular adaptor activity clathrin-cargo adaptor activity low-density lipoprotein particle receptor binding signaling receptor binding lipoprotein particle receptor binding disordered domain specific binding signal sequence binding binding peptide binding protein binding transmembrane transporter binding lipid binding cargo adaptor activity protein-macromolecule adaptor activity molecular adaptor activity clathrin-cargo adaptor activity low-density lipoprotein particle receptor binding signaling receptor binding lipoprotein particle receptor binding disordered domain specific binding protein domain specific binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell endocytosis regulation of localization regulation of cellular process regulation of protein localization negative regulation of biological process negative regulation of protein localization to plasma membrane negative regulation of cellular process intracellular protein localization regulation of protein localization to membrane negative regulation of protein localization regulation of biological process protein localization to cell periphery protein localization to plasma membrane biological regulation regulation of protein localization to cell periphery localization within membrane protein localization to membrane negative regulation of protein localization to membrane regulation of cellular localization macromolecule localization negative regulation of protein localization to cell periphery regulation of protein localization to plasma membrane receptor internalization receptor-mediated endocytosis regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process regulation of receptor internalization positive regulation of endocytosis positive regulation of receptor-mediated endocytosis positive regulation of cellular process regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport positive regulation of receptor internalization positive regulation of transport clathrin-dependent endocytosis postsynaptic neurotransmitter receptor internalization neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis regulation of biological quality regulation of cellular component size regulation of vesicle size regulation of anatomical structure size membrane organization vesicle budding from membrane vesicle organization organelle organization establishment of protein localization intracellular transport protein transport intracellular protein transport positive regulation of synaptic vesicle recycling regulation of synaptic vesicle recycling regulation of synaptic vesicle endocytosis positive regulation of synaptic vesicle endocytosis	cellular anatomical structure clathrin-coated pit membrane endomembrane system endosome membrane membrane-bounded organelle intracellular anatomical structure endolysosome membrane intracellular vesicle lytic vacuole intracellular organelle bounding membrane of organelle endolysosome vesicle membrane cellular anatomical structure clathrin-coated pit membrane endomembrane system endosome membrane membrane-bounded organelle intracellular anatomical structure endolysosome membrane intracellular vesicle lytic vacuole intracellular organelle bounding membrane of organelle endolysosome vesicle membrane cytoplasmic vesicle vesicle lysosome vacuolar membrane endosome vacuole intracellular membrane-bounded organelle lytic vacuole membrane cytoplasmic vesicle membrane organelle lysosomal membrane cytoplasm organelle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane clathrin-coated endocytic vesicle coated vesicle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle cytosol cell periphery plasma membrane protein-containing complex vesicle coat membrane protein complex membrane coat AP-type membrane coat adaptor complex AP-2 adaptor complex clathrin vesicle coat clathrin coat of coated pit clathrin coat of endocytic vesicle plasma membrane protein complex coated membrane clathrin coat clathrin adaptor complex synapse cell junction glutamatergic synapse extrinsic component of plasma membrane presynaptic endocytic zone presynaptic membrane extrinsic component of presynaptic endocytic zone membrane synaptic membrane extrinsic component of synaptic membrane presynapse presynaptic endocytic zone membrane extrinsic component of presynaptic membrane plasma membrane region extrinsic component of membrane cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane postsynapse transport vesicle synaptic vesicle secretory vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth P]	IPR040216	Cytotoxic T-lymphocyte protein 4/CD28	Family
B [auth P]	IPR008096	Cytotoxic T-lymphocyte antigen 4	Family
B [auth P]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B [auth P]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B [auth P]	IPR013106	Immunoglobulin V-set domain	Domain
B [auth P]	IPR003599	Immunoglobulin domain subtype	Domain
A	IPR043512	Mu2, C-terminal domain	Domain
A	IPR050431	Adaptor complexes medium subunit	Family
A	IPR036168	AP-2 complex subunit mu, C-terminal superfamily	Homologous Superfamily
A	IPR028565	Mu homology domain	Domain
A	IPR018240	Clathrin adaptor, mu subunit, conserved site	Conserved Site
A	IPR001392	Clathrin adaptor, mu subunit	Family
A	IPR011012	Longin-like domain superfamily	Homologous Superfamily
A	IPR043532	AP-2 complex subunit mu, N-terminal	Domain
A	IPR022775	AP complex, mu/sigma subunit	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth P]	Pharos: P16410	Hashimoto thyroiditis rheumatoid arthritis systemic lupus erythematosus oral submucous fibrosis alopecia areata juvenile idiopathic arthritis Graves disease autoimmune lymphoproliferative syndrome due to CTLA4 haploinsuffiency celiac disease melanoma adult T-cell leukemia/lymphoma type 1 diabetes mellitus 12 granulomatosis with polyangiitis peripheral nervous system disease mycosis fungoides Hashimoto thyroiditis rheumatoid arthritis systemic lupus erythematosus oral submucous fibrosis alopecia areata juvenile idiopathic arthritis Graves disease autoimmune lymphoproliferative syndrome due to CTLA4 haploinsuffiency celiac disease melanoma adult T-cell leukemia/lymphoma type 1 diabetes mellitus 12 granulomatosis with polyangiitis peripheral nervous system disease mycosis fungoides graft versus host disease peripheral neuropathy primary cutaneous T-cell non-Hodgkin lymphoma Sezary syndrome Lymphoma, T-Cell, Cutaneous vitiligo cutaneous lupus erythematosus malignant pleural mesothelioma diabetes mellitus gastric cancer ovarian disease acquired metabolic disease primary biliary cholangitis HIV infectious disease prostate disease autoimmune disease interstitial cystitis B-cell chronic lymphocytic leukemia Sjogren syndrome breast cancer kidney disease lung cancer ulcerative colitis colitis major depressive disorder cutaneous melanoma myasthenia gravis gastric carcinoma osteosarcoma granulomatous slack skin disease acute T cell leukemia head and neck cancer primary cutaneous T-cell lymphoma arthritic joint disease hypothyroidism psoriasis autoimmune lymphoproliferative syndrome invasive ductal breast carcinoma schizophrenia bipolar disorder skin basal cell carcinoma breast disease lung disease type 1 diabetes mellitus celiac disease, susceptibility to, 3 lymphatic system disease colonic disease malignant colon neoplasm demyelinating disease ovarian cancer hematologic disease atopic eczema inborn carbohydrate metabolic disorder renal cell carcinoma brain disease skin disease cancer liver disease lupus erythematosus chronic obstructive pulmonary disease
A	Pharos: Q96CW1	epilepsy psoriasis ovarian cancer rheumatoid arthritis plasma cell myeloma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.