1H56
Structural and biochemical characterization of a new magnesium ion binding site near Tyr94 in the restriction endonuclease PvuII
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1h56a_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease PvuII | Restriction endonuclease PvuII | (Proteus vulgaris ) [TaxId: 585 ], | SCOPe (2.08) |
B | d1h56b_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease PvuII | Restriction endonuclease PvuII | (Proteus vulgaris ) [TaxId: 585 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Endonuc-PvuII | e1h56A1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Endonuc-PvuII | ECOD (1.6) |
B | Endonuc-PvuII | e1h56B1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Endonuc-PvuII | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.210.10 | Alpha Beta | 3-Layer(aba) Sandwich | PvuII Endonuclease | Chain A | CATH (4.3.0) |
B | 3.40.210.10 | Alpha Beta | 3-Layer(aba) Sandwich | PvuII Endonuclease | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09225 | Restriction endonuclease PvuII (Endonuc-PvuII) | Restriction endonuclease PvuII | Members of this family are predominantly found in prokaryotic restriction endonuclease PvuII. They recognise the double-stranded DNA sequence 5'-CAGCTG-3' and cleave after G-3, resulting in specific double-stranded fragments with terminal 5'-phosphat ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011335 | Restriction endonuclease type II-like | Homologous Superfamily | |
IPR038402 | Restriction endonuclease, type II, PvuII superfamily | Homologous Superfamily | |
IPR015306 | Restriction endonuclease, type II, PvuII | Family |