1FV1 | pdb_00001fv1

STRUCTURAL BASIS FOR THE BINDING OF AN IMMUNODOMINANT PEPTIDE FROM MYELIN BASIC PROTEIN IN DIFFERENT REGISTERS BY TWO HLA-DR2 ALLELES


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd1fv1d1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC alpha chain, C-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd1fv1d2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad1fv1a1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC alpha chain, C-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad1fv1a2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed1fv1e1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC beta chain, C-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed1fv1e2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1fv1b1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class II MHC beta chain, C-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1fv1b2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054671 3000071 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMHC antigen-recognition domain 8040455 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8040455 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054671 3000071 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMHC antigen-recognition domain 8034732 3000521 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054697 3000071 SCOP2B (2022-06-29)
BSCOP2 FamilyMHC antigen-recognition domain 8022352 4001031 SCOP2 (2022-06-29)
BSCOP2 FamilyC1 set domains-like 8054696 4000202 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyMHC antigen-recognition domain 8034732 3000521 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyImmunoglobulin (Ig) domain-like 8054697 3000071 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DCopper-binde1fv1D1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
DMHC_I_3e1fv1D2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: MHC_I_3ECOD (v294.1)
ACopper-binde1fv1A1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
AMHC_I_3e1fv1A2 A: a/b three-layered sandwichesX: ETN0001 domain-likeH: ETN0001 domain-likeT: Mss4-likeF: MHC_I_3ECOD (v294.1)
ECopper-binde1fv1E1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
EMHC_II_betae1fv1E2 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MHC_II_betaECOD (v294.1)
BCopper-binde1fv1B1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: Copper-bindECOD (v294.1)
BMHC_II_betae1fv1B2 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MHC_II_betaECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A, D
MH2 HLA-DRA*0101_HLA-DRB5*0101 II-ALPHA Homo sapiens (human) HLA-DRA*0101, HLA-DRA*0102 G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE MH MH2-ALPHA_BETA IMGT (202613-0)
B, E
MH2 HLA-DRA*0101_HLA-DRB5*0101 II-BETA Homo sapiens (human) HLA-DRB5*0101 G-DOMAIN G-BETA, C-LIKE-DOMAIN C-LIKE MH MH2-ALPHA_BETA IMGT (202613-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
A, D
PF00993Class II histocompatibility antigen, alpha domain (MHC_II_alpha)Class II histocompatibility antigen, alpha domainDomain
B, E
PF00969Class II histocompatibility antigen, beta domain (MHC_II_beta)Class II histocompatibility antigen, beta domainDomain
B, E
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D
MAJOR HISTOCOMPATIBILITY COMPLEX ALPHA CHAIN
B, E
MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN
C, F
MYELIN BASIC PROTEIN

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, D
PharosP01903
B, E
PharosQ30154
C, F
PharosP02686