1ELK | pdb_00001elk

VHS domain of TOM1 protein from H. sapiens

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1elkb_	All alpha proteins	alpha-alpha superhelix	ENTH/VHS domain	VHS domain	Tom1 protein	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1elka_	All alpha proteins	alpha-alpha superhelix	ENTH/VHS domain	VHS domain	Tom1 protein	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	ENTH/VHS domain-like	8038658	3000164	SCOP2B (2022-06-29)
A	SCOP2 Family	VHS domain	8026279	4001359	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ENTH/VHS domain-like	8038658	3000164	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	VHS	e1elkB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: VHS	ECOD (1.6)
A	VHS	e1elkA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: VHS	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.25.40.90	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
A	1.25.40.90	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00790	VHS domain (VHS)	VHS domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	TARGET OF MYB1	clathrin binding protein binding binding ubiquitin binding ubiquitin-like protein binding myosin VI binding cytoskeletal protein binding myosin binding clathrin heavy chain binding phosphatidylinositol-5-phosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding clathrin binding protein binding binding ubiquitin binding ubiquitin-like protein binding myosin VI binding cytoskeletal protein binding myosin binding clathrin heavy chain binding phosphatidylinositol-5-phosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding polyubiquitin modification-dependent protein binding modification-dependent protein binding	membrane organization catabolic process transport macroautophagy membrane fusion organelle membrane fusion autophagy establishment of localization vesicle-mediated transport vesicle organization cellular component organization organelle fusion localization organelle organization autophagosome-lysosome fusion membrane organization catabolic process transport macroautophagy membrane fusion organelle membrane fusion autophagy establishment of localization vesicle-mediated transport vesicle organization cellular component organization organelle fusion localization organelle organization autophagosome-lysosome fusion cellular process metabolic process cellular component organization or biogenesis vesicle fusion process utilizing autophagic mechanism import into cell endocytosis establishment of protein localization nitrogen compound transport protein transport macromolecule localization intracellular protein localization positive regulation of organelle organization regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization regulation of autophagosome maturation positive regulation of biological process protein-containing complex disassembly regulation of autophagy regulation of protein-containing complex disassembly positive regulation of metabolic process autophagosome maturation positive regulation of macroautophagy positive regulation of protein-containing complex disassembly positive regulation of cellular process cellular component disassembly positive regulation of autophagy regulation of biological process protein-containing complex organization biological regulation regulation of catabolic process positive regulation of autophagosome maturation regulation of organelle organization positive regulation of catabolic process regulation of macroautophagy regulation of metabolic process cellular response to stimulus response to stimulus signaling signal transduction cell communication cellular localization establishment of localization in cell intracellular transport endosomal transport regulation of endosome organization endosome organization endomembrane system organization substrate localization to autophagosome autophagosome assembly organelle assembly vacuole organization autophagosome organization cellular component biogenesis cellular component assembly	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle lytic vacuole lysosome vacuolar membrane azurophil granule vacuole lytic vacuole membrane lysosomal membrane primary lysosome azurophil granule membrane cytosol cell periphery plasma membrane early endosome endosome Golgi apparatus endosome membrane early endosome membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002014	VHS domain	Domain
A, B	IPR008942	ENTH/VHS	Homologous Superfamily
A, B	IPR014645	Target of Myb protein 1	Family
A, B	IPR038425	GAT domain superfamily	Homologous Superfamily
A, B	IPR004152	GAT domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O60784	bipolar disorder ulcerative colitis major affective disorder 2 plasma cell myeloma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.