7JHG
Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Dorsomorphin (Compound C) and Fab-nanobody
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8081561 | 3000066 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | AMPKBI-like | 8037381 | 3000446 | SCOP2B (2022-06-29) |
D [auth M] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AdenylateSensor_1 | e7jhgA2 | A: a+b two layers | X: TBP-like | H: Kinase associated domain 1, KA1 (From Topology) | T: Kinase associated domain 1, KA1 | F: AdenylateSensor_1 | ECOD (1.6) |
A | Pkinase_Tyr | e7jhgA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
B | AMPKBI | e7jhgB1 | A: a+b two layers | X: AMPKBI-like (From Topology) | H: AMPKBI-like (From Topology) | T: AMPKBI-like | F: AMPKBI | ECOD (1.6) |
C [auth G] | IMPDH_2nd_1 | e7jhgG2 | A: a+b duplicates or obligate multimers | X: CBS-domain (From Topology) | H: CBS-domain (From Topology) | T: CBS-domain | F: IMPDH_2nd_1 | ECOD (1.6) |
D [auth M] | SBP_bac_1_C,SBP_bac_1_N_2 | e7jhgM1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C,SBP_bac_1_N_2 | ECOD (1.6) |
E [auth L] | C1-set_4 | e7jhgL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
E [auth L] | V-set | e7jhgL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
F [auth H] | V-set_8 | e7jhgH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
F [auth H] | C1-set_1 | e7jhgH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
G [auth N] | V-set_12 | e7jhgN1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
E [auth L] | Light Chain | IGKV1 | Kappa | 5'-amp-activated protein kinase catalytic subunit alpha-1 | SAbDab (2024-09-13) |
F [auth H] | Heavy Chain | IGHV3 | - | 5'-amp-activated protein kinase catalytic subunit alpha-1 | SAbDab (2024-09-13) |
G [auth N] | Heavy Chain | IGHV1 | - | - | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain | |
PF16579 | Adenylate sensor of SNF1-like protein kinase (AdenylateSensor) | Adenylate sensor of SNF1-like protein kinase | AdenylateSensor is a family found at the C-terminus of SNF1-like protein kinases snf other protein-kinases [1]. | Domain | |
PF04739 | 5'-AMP-activated protein kinase beta subunit, interaction domain (AMPKBI) | 5'-AMP-activated protein kinase beta subunit, interaction domain | - | Family | |
C [auth G] | PF00571 | CBS domain (CBS) | CBS domain | CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ... | Domain |
D [auth M] | PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family |