6RPQ
Crystal structure of PhoCDC21-1 intein
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Intein (protein splicing domain) | 8101480 | 4002988 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Hedgehog/intein (Hint) domain | 8101481 | 3001979 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Ubiquitin-like | 8034468 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Intein_splicing | e6rpqA2 | A: beta complex topology | X: Hedgehog/intein (From Homology) | H: Hedgehog/intein | T: Hint | F: Intein_splicing | ECOD (1.6) |
A | Rad60-SLD | e6rpqA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14890 | Intein splicing domain (Intein_splicing) | Intein splicing domain | - | Family | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036844 | Hint domain superfamily | Homologous Superfamily | |
IPR027925 | MCM, N-terminal domain | Domain | |
IPR030934 | Intein C-terminal splicing region | Conserved Site | |
IPR031327 | Mini-chromosome maintenance protein | Family | |
IPR006142 | Intein | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR006141 | Intein N-terminal splicing region | PTM | |
IPR033762 | MCM OB domain | Domain | |
IPR003587 | Hint domain N-terminal | Domain | |
IPR001208 | MCM domain | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR041562 | MCM, AAA-lid domain | Domain | |
IPR003586 | Hint domain C-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR022617 | Rad60/SUMO-like domain | Domain |