6QYM

The cryo-EM structure of the connector of the genome empited bacteriophage phi29

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth 0a]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
B [auth 0b]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
C [auth 0c]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
D [auth 0d]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
E [auth 0e]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
F [auth 0f]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
G [auth 0g]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
H [auth 0h]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
I [auth 0i]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
J [auth 0j]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
K [auth 0k]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
L [auth 0l]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 0a]	PF05352	e6qym0a2	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
A [auth 0a]	PF05352	e6qym0a1	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
B [auth 0b]	PF05352	e6qym0b2	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
B [auth 0b]	PF05352	e6qym0b1	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
C [auth 0c]	PF05352	e6qym0c2	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
C [auth 0c]	PF05352	e6qym0c1	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
D [auth 0d]	PF05352	e6qym0d2	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
D [auth 0d]	PF05352	e6qym0d1	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
E [auth 0e]	PF05352	e6qym0e2	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
E [auth 0e]	PF05352	e6qym0e1	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
F [auth 0f]	PF05352	e6qym0f1	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
F [auth 0f]	PF05352	e6qym0f2	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
G [auth 0g]	PF05352	e6qym0g1	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
G [auth 0g]	PF05352	e6qym0g2	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
H [auth 0h]	PF05352	e6qym0h2	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
H [auth 0h]	PF05352	e6qym0h1	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
I [auth 0i]	PF05352	e6qym0i2	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
I [auth 0i]	PF05352	e6qym0i1	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
J [auth 0j]	PF05352	e6qym0j1	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
J [auth 0j]	PF05352	e6qym0j2	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
K [auth 0k]	PF05352	e6qym0k1	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
K [auth 0k]	PF05352	e6qym0k2	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)
L [auth 0l]	PF05352	e6qym0l2	A: beta barrels	X: Barrel domain in upper collar protein (From Topology)	H: Barrel domain in upper collar protein (From Topology)	T: Barrel domain in upper collar protein	F: PF05352	ECOD (1.6)
L [auth 0l]	PF05352	e6qym0l1	A: alpha bundles	X: Alpha-helical domain in upper collar protein (From Topology)	H: Alpha-helical domain in upper collar protein (From Topology)	T: Alpha-helical domain in upper collar protein	F: PF05352	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], F [auth 0f], G [auth 0g], H [auth 0h], I [auth 0i], J [auth 0j], K [auth 0k], L [auth 0l]	PF05352	Phage Connector (GP10) (Phage_connector)	Phage Connector (GP10)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], F [auth 0f], G [auth 0g], H [auth 0h], I [auth 0i], J [auth 0j], K [auth 0k], L [auth 0l]	Portal protein	RNA binding binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction	viral procapsid virion component protein-containing complex viral capsid viral portal complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], F [auth 0f], G [auth 0g], H [auth 0h], I [auth 0i], J [auth 0j], K [auth 0k], L [auth 0l]	IPR008016	Portal protein Gp10	Family
A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], F [auth 0f], G [auth 0g], H [auth 0h], I [auth 0i], J [auth 0j], K [auth 0k], L [auth 0l]	IPR036199	Portal protein Gp10 superfamily	Homologous Superfamily