6QYM | pdb_00006qym

The cryo-EM structure of the connector of the genome empited bacteriophage phi29

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth 0l]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
K [auth 0k]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
J [auth 0j]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
I [auth 0i]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
H [auth 0h]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
G [auth 0g]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
F [auth 0f]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
E [auth 0e]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
D [auth 0d]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
C [auth 0c]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
B [auth 0b]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
A [auth 0a]	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth 0l]		e6qym0l1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
K [auth 0k]		e6qym0k1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
J [auth 0j]		e6qym0j1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
I [auth 0i]		e6qym0i1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
H [auth 0h]		e6qym0h1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
G [auth 0g]		e6qym0g1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
F [auth 0f]		e6qym0f1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
E [auth 0e]		e6qym0e1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
D [auth 0d]		e6qym0d1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
C [auth 0c]		e6qym0c1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
B [auth 0b]		e6qym0b1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)
A [auth 0a]		e6qym0a1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: DAO	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], F [auth 0f], G [auth 0g], H [auth 0h], I [auth 0i], J [auth 0j], K [auth 0k], L [auth 0l]	Portal protein	RNA binding binding nucleic acid binding	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction	viral procapsid virion component protein-containing complex viral capsid viral portal complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], F [auth 0f], G [auth 0g], H [auth 0h], I [auth 0i], J [auth 0j], K [auth 0k], L [auth 0l]	IPR008016	Portal protein Gp10	Family
A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], A [auth 0a], B [auth 0b], C [auth 0c], D [auth 0d], E [auth 0e], F [auth 0f], G [auth 0g], H [auth 0h], I [auth 0i], J [auth 0j], K [auth 0k], L [auth 0l]	IPR036199	Portal protein Gp10 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.