6PW2
Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Viral DNA-binding domain | 8035383 | 3001239 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Viral DNA-binding domain | 8035383 | 3001239 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Viral DNA-binding domain | 8035383 | 3001239 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Viral DNA-binding domain | 8035383 | 3001239 | SCOP2B (2022-06-29) |
G [auth I] | SCOP2B Superfamily | Viral DNA-binding domain | 8035383 | 3001239 | SCOP2B (2022-06-29) |
H [auth J] | SCOP2B Superfamily | Viral DNA-binding domain | 8035383 | 3001239 | SCOP2B (2022-06-29) |
I [auth K] | SCOP2B Superfamily | Viral DNA-binding domain | 8035383 | 3001239 | SCOP2B (2022-06-29) |
J [auth L] | SCOP2B Superfamily | Viral DNA-binding domain | 8035383 | 3001239 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EBV-NA1 | e6pw2A1 | A: a+b two layers | X: Alpha-beta plaits | H: Viral DNA-binding domain (From Topology) | T: Viral DNA-binding domain | F: EBV-NA1 | ECOD (1.6) |
B | EBV-NA1 | e6pw2B1 | A: a+b two layers | X: Alpha-beta plaits | H: Viral DNA-binding domain (From Topology) | T: Viral DNA-binding domain | F: EBV-NA1 | ECOD (1.6) |
C | EBV-NA1 | e6pw2C1 | A: a+b two layers | X: Alpha-beta plaits | H: Viral DNA-binding domain (From Topology) | T: Viral DNA-binding domain | F: EBV-NA1 | ECOD (1.6) |
D | EBV-NA1 | e6pw2D1 | A: a+b two layers | X: Alpha-beta plaits | H: Viral DNA-binding domain (From Topology) | T: Viral DNA-binding domain | F: EBV-NA1 | ECOD (1.6) |
G [auth I] | EBV-NA1 | e6pw2I1 | A: a+b two layers | X: Alpha-beta plaits | H: Viral DNA-binding domain (From Topology) | T: Viral DNA-binding domain | F: EBV-NA1 | ECOD (1.6) |
H [auth J] | EBV-NA1 | e6pw2J1 | A: a+b two layers | X: Alpha-beta plaits | H: Viral DNA-binding domain (From Topology) | T: Viral DNA-binding domain | F: EBV-NA1 | ECOD (1.6) |
I [auth K] | EBV-NA1 | e6pw2K1 | A: a+b two layers | X: Alpha-beta plaits | H: Viral DNA-binding domain (From Topology) | T: Viral DNA-binding domain | F: EBV-NA1 | ECOD (1.6) |
J [auth L] | EBV-NA1 | e6pw2L1 | A: a+b two layers | X: Alpha-beta plaits | H: Viral DNA-binding domain (From Topology) | T: Viral DNA-binding domain | F: EBV-NA1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02905 | Epstein Barr virus nuclear antigen-1, DNA-binding domain (EBV-NA1) | Epstein Barr virus nuclear antigen-1, DNA-binding domain | This domain has a ferredoxin-like fold. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004186 | Epstein Barr virus nuclear antigen-1, DNA-binding | Domain | |
IPR035975 | E2/EBNA1, C-terminal | Homologous Superfamily | |
IPR037007 | Epstein Barr virus nuclear antigen-1, DNA-binding domain superfamily | Homologous Superfamily |