6OSV

Potent and Selective Antitumor Antibody Targeting a Membrane-Proximal Epitope of ROR2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth L]	d6osvl_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)
B [auth K]	d6osvk_	Small proteins	Kringle-like	Kringle-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth H]	d6osvh_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Oryctolagus cuniculus ) [TaxId: 9986 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth L]	V-set	e6osvL1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
B [auth K]	Kringle	e6osvK1	A: few secondary structure elements	X: Kringle-like (From Topology)	H: Kringle-like (From Topology)	T: Kringle-like	F: Kringle	ECOD (1.6)
C [auth H]	V-set_8	e6osvH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth K]	2.40.20.10	Mainly Beta	Beta Barrel	Plasminogen Kringle 4	Plasminogen Kringle 4	CATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A [auth L]	Light Chain	IGKV1	Kappa	tyrosine-protein kinase transmembrane receptor ror2	SAbDab (2024-04-19)
C [auth H]	Heavy Chain	IGHV3	-	tyrosine-protein kinase transmembrane receptor ror2	SAbDab (2024-04-19)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth K]	PF00051	Kringle domain (Kringle)	Kringle domain	Kringle domains have been found in plasminogen, hepatocyte growth factors, prothrombin, and apolipoprotein A. Structure is disulfide-rich, nearly all-beta.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth L]	Antibody light chain variable region	-	-	-
B [auth K]	Tyrosine-protein kinase transmembrane receptor ROR2	molecular transducer activity coreceptor activity signaling receptor activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity molecular transducer activity coreceptor activity signaling receptor activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein binding kinase binding mitogen-activated protein kinase kinase kinase binding enzyme binding protein kinase binding cation binding metal ion binding Wnt-protein binding	developmental process multicellular organismal process ossification bone mineralization animal organ development anatomical structure development biomineral tissue development tissue development positive regulation of cell communication regulation of cellular process signaling modulation of chemical synaptic transmission synaptic transmission, glutamatergic positive regulation of biological process developmental process multicellular organismal process ossification bone mineralization animal organ development anatomical structure development biomineral tissue development tissue development positive regulation of cell communication regulation of cellular process signaling modulation of chemical synaptic transmission synaptic transmission, glutamatergic positive regulation of biological process regulation of synaptic transmission, glutamatergic cell communication synaptic signaling positive regulation of cellular process trans-synaptic signaling regulation of signaling regulation of biological process biological regulation positive regulation of synaptic transmission cell-cell signaling positive regulation of synaptic transmission, glutamatergic chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process positive regulation of signaling regulation of synaptic signaling by nitric oxide synaptic signaling by nitric oxide genitalia development reproductive system development reproductive process sex differentiation developmental process involved in reproduction male sex differentiation multicellular organism development male genitalia development reproductive structure development system development cellular response to stimulus regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signal transduction response to stimulus regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of response to stimulus phosphatidylinositol 3-kinase/protein kinase B signal transduction cellular developmental process astrocyte differentiation cell development nervous system development glial cell development neurogenesis astrocyte development central nervous system development gliogenesis glial cell differentiation cell differentiation regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cell projection organization neuron projection development cellular component organization neuron differentiation positive regulation of neuron projection development positive regulation of cell projection organization cellular component organization or biogenesis plasma membrane bounded cell projection organization regulation of cell projection organization generation of neurons neuron development regulation of plasma membrane bounded cell projection organization leukocyte migration immune system process mononuclear cell migration myeloid leukocyte migration macrophage migration cell migration cell motility positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion phosphorylation cellular metabolic process phosphate-containing compound metabolic process metabolic process phosphorus metabolic process myeloid leukocyte differentiation regulation of leukocyte differentiation regulation of developmental process regulation of cell differentiation mononuclear cell differentiation regulation of cell development positive regulation of developmental process positive regulation of cell differentiation positive regulation of hemopoiesis regulation of immune system process regulation of multicellular organismal process regulation of macrophage differentiation positive regulation of immune system process regulation of multicellular organismal development hemopoiesis regulation of myeloid cell differentiation positive regulation of cell development macrophage differentiation regulation of myeloid leukocyte differentiation positive regulation of myeloid leukocyte differentiation positive regulation of macrophage differentiation myeloid cell differentiation positive regulation of myeloid cell differentiation regulation of hemopoiesis positive regulation of multicellular organismal process positive regulation of leukocyte differentiation leukocyte differentiation cell surface receptor signaling pathway Wnt signaling pathway postsynapse organization regulation of postsynapse organization regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway	membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane membrane cellular anatomical entity intracellular membrane-bounded organelle clathrin-coated endocytic vesicle cytoplasmic vesicle membrane coated vesicle membrane organelle cytoplasm organelle membrane cell surface cell periphery plasma membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection synapse cell junction glutamatergic synapse protein-containing complex receptor complex cell body neuronal cell body postsynapse polymeric cytoskeletal fiber cytoskeleton intracellular non-membrane-bounded organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton non-membrane-bounded organelle
C [auth H]	Antibody heavy chain variable region	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth K]	IPR036790	Frizzled cysteine-rich domain superfamily	Homologous Superfamily
B [auth K]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B [auth K]	IPR003599	Immunoglobulin subtype	Domain
B [auth K]	IPR003598	Immunoglobulin subtype 2	Domain
B [auth K]	IPR008266	Tyrosine-protein kinase, active site	Active Site
B [auth K]	IPR018056	Kringle, conserved site	Conserved Site
B [auth K]	IPR000719	Protein kinase domain	Domain
B [auth K]	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
B [auth K]	IPR013098	Immunoglobulin I-set	Domain
B [auth K]	IPR016247	Tyrosine-protein kinase, receptor ROR	Family
B [auth K]	IPR013806	Kringle-like fold	Homologous Superfamily
B [auth K]	IPR038178	Kringle superfamily	Homologous Superfamily
B [auth K]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
B [auth K]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B [auth K]	IPR007110	Immunoglobulin-like domain	Domain
B [auth K]	IPR020067	Frizzled domain	Domain
B [auth K]	IPR000001	Kringle	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth K]	Pharos: Q01974	autosomal recessive Robinow syndrome brachydactyly type B1 Robinow syndrome brachydactyly type B colorectal adenocarcinoma intellectual disability medulloblastoma psoriasis ROBINOW SYNDROME, AUTOSOMAL RECESSIVE, WITH BRACHY-SYN-POLYDACTYLY brachydactyly cystic fibrosis malignant ependymoma osteogenesis imperfecta hydrolethalus syndrome malignant mesothelioma autosomal recessive Robinow syndrome brachydactyly type B1 Robinow syndrome brachydactyly type B colorectal adenocarcinoma intellectual disability medulloblastoma psoriasis ROBINOW SYNDROME, AUTOSOMAL RECESSIVE, WITH BRACHY-SYN-POLYDACTYLY brachydactyly cystic fibrosis malignant ependymoma osteogenesis imperfecta hydrolethalus syndrome malignant mesothelioma ovarian cancer

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.