6O73
Crystal structure of apo Csm1-Csm4 cassette
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6o73a5 | All alpha proteins | Four-helical up-and-down bundle | Helical bundle domains from Csm1/Cmr1-like | automated matches | automated matches | (Thermococcus onnurineus ) [TaxId: 342948 ], | SCOPe (2.08) |
A | d6o73a1 | All alpha proteins | HD-domain/PDEase-like | HD-domain/PDEase-like | automated matches | automated matches | (Thermococcus onnurineus ) [TaxId: 342948 ], | SCOPe (2.08) |
A | d6o73a2 | Alpha and beta proteins (a+b) | Ferredoxin-like | Ferredoxin-like domains from CRISPR-associated proteins | automated matches | automated matches | (Thermococcus onnurineus ) [TaxId: 342948 ], | SCOPe (2.08) |
A | d6o73a3 | Alpha and beta proteins (a+b) | B domain from Cmr1-like | B domain from Cmr1-like | automated matches | automated matches | (Thermococcus onnurineus ) [TaxId: 342948 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e6o73A2 | A: alpha bundles | X: CRISPR RNA silencing complex Cmr2 subunit second helical domain (From Topology) | H: CRISPR RNA silencing complex Cmr2 subunit second helical domain (From Topology) | T: CRISPR RNA silencing complex Cmr2 subunit second helical domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF01966 | e6o73A4 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: PF01966 | ECOD (1.6) |
A | PF18211 | e6o73A5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF18211 | ECOD (1.6) |
A | PF22335 | e6o73A1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF22335 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6o73A3 | A: a+b two layers | X: Csm1 ferredoxin-like domain (From Topology) | H: Csm1 ferredoxin-like domain (From Topology) | T: Csm1 ferredoxin-like domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e6o73B1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF03787 | e6o73B2 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: PF03787 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18211 | Csm1 subunit domain B (Csm1_B) | Csm1 subunit domain B | This domain is found in the Csm1 subunit of the Csm complex found in Thermococcus onnurineus. Csm is a type III-A CRISPR-Cas system, which is an RNA-guided immune defense mechanism that detects and destroys foreign DNA or RNA. This domain is known as ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000160 | GGDEF domain | Domain | |
IPR013408 | CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 | Family | |
IPR041062 | Csm1, subunit domain B | Domain | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR006674 | HD domain | Domain | |
IPR005510 | CRISPR type III-associated RAMP protein Csm4 | Family |