6O60
Crystal structure of GGTase3-FBXL2-SKP1 complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6o60b_ | All alpha proteins | alpha/alpha toroid | Terpenoid cyclases/Protein prenyltransferases | Protein prenyltransferases | Rab geranylgeranyltransferase, beta subunit | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d6o60d2 | All alpha proteins | Skp1 dimerisation domain-like | Skp1 dimerisation domain-like | Skp1 dimerisation domain-like | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d6o60d1 | Alpha and beta proteins (a+b) | POZ domain | POZ domain | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Terpenoid cyclases/Protein prenyltransferases | 8094327 | 3001024 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Skp1 dimerisation domain-like | 8038683 | 3000564 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | POZ domain | 8035033 | 3000894 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PPTA | e6o60A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PPTA | ECOD (1.6) |
B | SQHop_cyclase_C | e6o60B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: SQHop_cyclase_C | ECOD (1.6) |
C | LRR_8_4 | e6o60C2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_4 | ECOD (1.6) |
C | LRR_8_3 | e6o60C1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_3 | ECOD (1.6) |
C | F-box-like | e6o60C3 | A: alpha arrays | X: F-box domain (From Topology) | H: F-box domain (From Topology) | T: F-box domain | F: F-box-like | ECOD (1.6) |
D | Skp1_POZ | e6o60D1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.50.10.20 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | CATH (utative) | |
D | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01239 | Protein prenyltransferase alpha subunit repeat (PPTA) | Protein prenyltransferase alpha subunit repeat | - | Repeat | |
PF00432 | Prenyltransferase and squalene oxidase repeat (Prenyltrans) | Prenyltransferase and squalene oxidase repeat | - | Repeat | |
PF00646 | F-box domain (F-box) | F-box domain | This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; Pfam:PF00560 and Pfam:PF07 ... | Domain | |
PF13516 | Leucine Rich repeat (LRR_6) | Leucine Rich repeat | - | Repeat | |
PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain | |
PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002088 | Protein prenyltransferase, alpha subunit | Repeat | |
IPR001330 | PFTB repeat | Repeat | |
IPR045089 | Prenyltransferase subunit beta | Family | |
IPR026873 | Geranylgeranyl transferase type-2 subunit beta | Family | |
IPR008930 | Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid | Homologous Superfamily | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR001810 | F-box domain | Domain | |
IPR050648 | F-box/Leucine-rich repeat | Family | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR006553 | Leucine-rich repeat, cysteine-containing subtype | Repeat | |
IPR016073 | SKP1 component, POZ domain | Domain | |
IPR001232 | S-phase kinase-associated protein 1-like | Family | |
IPR036296 | SKP1-like, dimerisation domain superfamily | Homologous Superfamily | |
IPR016072 | SKP1 component, dimerisation | Domain | |
IPR011333 | SKP1/BTB/POZ domain superfamily | Homologous Superfamily | |
IPR016897 | S-phase kinase-associated protein 1 | Family |