6ML1
Structure of the USP15 deubiquitinase domain in complex with an affinity-matured inhibitory Ubv
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6ml1a_ | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth E] | d6ml1e1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth E] | d6ml1e2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth C] | d6ml1c1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth C] | d6ml1c2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00443 | e6ml1A1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00443 | ECOD (1.6) |
B | PF00443 | e6ml1B1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00443 | ECOD (1.6) |
C [auth E] | PF00240 | e6ml1E1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
D [auth C] | PF00240 | e6ml1C1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.70.10 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
B | 3.90.70.10 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00443 | Ubiquitin carboxyl-terminal hydrolase (UCH) | Ubiquitin carboxyl-terminal hydrolase | - | Family | |
C [auth E], D [auth C] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028889 | Ubiquitin specific protease domain | Domain | |
IPR018200 | Ubiquitin specific protease, conserved site | Conserved Site | |
IPR006615 | Peptidase C19, ubiquitin-specific peptidase, DUSP domain | Domain | |
IPR013792 | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | Homologous Superfamily | |
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR029346 | Ubiquitin carboxyl-terminal hydrolase, C-terminal | Domain | |
IPR028135 | Ubiquitin-like domain, USP-type | Domain | |
IPR035927 | DUSP-like superfamily | Homologous Superfamily | |
IPR001394 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
C [auth E], D [auth C] | IPR019956 | Ubiquitin domain | Domain |
C [auth E], D [auth C] | IPR019954 | Ubiquitin conserved site | Conserved Site |
C [auth E], D [auth C] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
C [auth E], D [auth C] | IPR000626 | Ubiquitin-like domain | Domain |