6JH1
Crystal structure of bISG15/NS1B complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6jh1a_ | All alpha proteins | S15/NS1 RNA-binding domain | S15/NS1 RNA-binding domain | N-terminal, RNA-binding domain of nonstructural protein NS1 | N-terminal, RNA-binding domain of nonstructural protein NS1 | (Influenza B virus (B/Lee/1940) ) [TaxId: 518987 ], | SCOPe (2.08) |
B | d6jh1b_ | All alpha proteins | S15/NS1 RNA-binding domain | S15/NS1 RNA-binding domain | N-terminal, RNA-binding domain of nonstructural protein NS1 | N-terminal, RNA-binding domain of nonstructural protein NS1 | (Influenza B virus (B/Lee/1940) ) [TaxId: 518987 ], | SCOPe (2.08) |
C [auth D] | d6jh1d1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | automated matches | automated matches | Bovine (Bos taurus ) [TaxId: 9913 ], | SCOPe (2.08) |
D [auth C] | d6jh1c1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | automated matches | automated matches | Bovine (Bos taurus ) [TaxId: 9913 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02942 | e6jh1A1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF02942 | ECOD (1.6) |
B | PF02942 | e6jh1B1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF02942 | ECOD (1.6) |
C [auth D] | PF00240 | e6jh1D2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
D [auth C] | PF00240 | e6jh1C1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.287.10 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | S15/NS1, RNA-binding | CATH (utative) |
B | 1.10.287.10 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | S15/NS1, RNA-binding | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02942 | Influenza B non-structural protein (NS1) (Flu_B_NS1) | Influenza B non-structural protein (NS1) | - | Family | |
C [auth D], D [auth C] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009068 | uS15/NS1, RNA-binding domain superfamily | Homologous Superfamily | |
IPR004208 | Influenza non-structural protein (NS1) | Family | |
C [auth D], D [auth C] | IPR000626 | Ubiquitin-like domain | Domain |
C [auth D], D [auth C] | IPR015496 | Ubiquilin | Family |
C [auth D], D [auth C] | IPR019956 | Ubiquitin domain | Domain |
C [auth D], D [auth C] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |