6JH1 | pdb_00006jh1

Crystal structure of bISG15/NS1B complex

PDB DOI: https://doi.org/10.2210/pdb6JH1/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Influenza B virus (B/Lee/1940), Bos taurus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2019-02-16 Released: 2019-10-16
Deposition Author(s): Jiang, Y.N., Wang, X.W.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free:
0.274 (Depositor), 0.269 (DCC)
R-Value Work:
0.219 (Depositor), 0.232 (DCC)
R-Value Observed:
0.222 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6JH1

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of bISG15/NS1B complex

Jiang, Y.N., Wang, X.Q.

To be published.

Macromolecule Content

Total Structure Weight: 58.39 kDa
Atom Count: 3,795
Modeled Residue Count: 477
Deposited Residue Count: 514
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-structural protein 1	A, B	103	Influenza B virus (B/Lee/1940)	Mutation(s): 0 Gene Names: NS
UniProt
Find proteins for P03502 (Influenza B virus (strain B/Lee/1940)) Explore P03502 Go to UniProtKB: P03502
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03502
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-like protein ISG15	C [auth D], D [auth C]	154	Bos taurus	Mutation(s): 1 Gene Names: Isg15
UniProt
Find proteins for O02741 (Bos taurus) Explore O02741 Go to UniProtKB: O02741
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O02741
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.274 (Depositor), 0.269 (DCC)
R-Value Work: 0.219 (Depositor), 0.232 (DCC)
R-Value Observed: 0.222 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.14	α = 90
b = 80.05	β = 90
c = 109.67	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2019-10-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31470751
National Natural Science Foundation of China	China	U1405228

Revision History (Full details and data files)

Version 1.0: 2019-10-16
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.