6AJ9
The structure of Enterovirus D68 mature virion in complex with Fab 15C5 and 11G1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8077433 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | V-set | e6aj9E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth D] | V-set_8 | e6aj9D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth L] | V-set | e6aj9L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D [auth H] | V-set_8 | e6aj9H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
E [auth A] | Rhv_5 | e6aj9A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_5 | ECOD (1.6) |
F [auth B] | Rhv_1 | e6aj9B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_1 | ECOD (1.6) |
G [auth C] | Rhv_3 | e6aj9C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
F [auth B] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
G [auth C] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth E] | Fab 11G1 | V-KAPPA | Mus musculus (house mouse) | IGKV8-30*01, IGKJ1*01 | V-DOMAIN V-KAPPA | IG | VH-V-KAPPA | IMGT (202436-0) |
B [auth D] | Fab 11G1 | VH | Mus musculus (house mouse) | IGHV1S137*01, IGHJ4*01 | V-DOMAIN VH | IG | VH-V-KAPPA | IMGT (202436-0) |
C [auth L] | Fab 15C5 | V-KAPPA | Mus musculus (house mouse) | IGKV9-123*01, IGKJ1*01, IGKJ2*01 | V-DOMAIN V-KAPPA | IG | VH-V-KAPPA | IMGT (202436-0) |
D [auth H] | Fab 15C5 | VH | Mus musculus (house mouse) | IGHV1-7*01, IGHV1-4*01, IGHJ3*01 | V-DOMAIN VH | IG | VH-V-KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth E] | Light Chain | IGKV8 | Kappa | capsid protein vp1 | SAbDab (2024-09-13) |
B [auth D] | Heavy Chain | IGHV1 | - | capsid protein vp1 | SAbDab (2024-09-13) |
C [auth L] | Light Chain | IGKV9 | Kappa | capsid protein vp3 | capsid protein vp2 | SAbDab (2024-09-13) |
D [auth H] | Heavy Chain | IGHV1 | - | capsid protein vp3 | capsid protein vp2 | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
F [auth B] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |
G [auth C] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |