5NRO
Structure of full-length DnaK with bound J-domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Actin-like ATPases | 8044476 | 3000092 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Heat shock protein 70kD (HSP70), C-terminal subdomain | 8035544 | 3000668 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | heat shock protein 70kd (hsp70), peptide-binding domain | 8035545 | 3000642 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Actin-like ATPases | 8044475 | 3000092 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Chaperone J-domain | 8036317 | 3000721 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HSP70_2nd | e5nroA2 | A: beta sandwiches | X: Heat shock protein 70kD (HSP70), peptide-binding domain (From Topology) | H: Heat shock protein 70kD (HSP70), peptide-binding domain (From Topology) | T: Heat shock protein 70kD (HSP70), peptide-binding domain | F: HSP70_2nd | ECOD (1.6) |
A | HSP70_3rd | e5nroA3 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Heat shock protein 70kD (HSP70), C-terminal subdomain (From Topology) | T: Heat shock protein 70kD (HSP70), C-terminal subdomain | F: HSP70_3rd | ECOD (1.6) |
A | HSP70_1st | e5nroA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HSP70_1st | ECOD (1.6) |
A | MreB_Mbl_C | e5nroA4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: MreB_Mbl_C | ECOD (1.6) |
B | DnaJ | e5nroB1 | A: alpha bundles | X: Chaperone J-domain (From Topology) | H: Chaperone J-domain (From Topology) | T: Chaperone J-domain | F: DnaJ | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
A | 3.90.640.10 | Alpha Beta | Alpha-Beta Complex | Actin | Chain A, domain 4 | CATH (4.3.0) |
A | 2.60.34.10 | Mainly Beta | Sandwich | Substrate Binding Domain Of DNAk | Chain A, domain 1 | CATH (4.3.0) |
A | 1.20.1270.10 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
B | 1.10.287.110 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | DnaJ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00012 | Hsp70 protein (HSP70) | Hsp70 protein | - | Family | |
PF00226 | DnaJ domain (DnaJ) | DnaJ domain | DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are conf ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018181 | Heat shock protein 70, conserved site | Conserved Site | |
IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily | |
IPR012725 | Chaperone DnaK | Family | |
IPR029048 | Heat shock protein 70kD, C-terminal domain superfamily | Homologous Superfamily | |
IPR029047 | Heat shock protein 70kD, peptide-binding domain superfamily | Homologous Superfamily | |
IPR013126 | Heat shock protein 70 family | Family | |
IPR001305 | Heat shock protein DnaJ, cysteine-rich domain | Domain | |
IPR001623 | DnaJ domain | Domain | |
IPR012724 | Chaperone DnaJ | Family | |
IPR018253 | DnaJ domain, conserved site | Conserved Site | |
IPR002939 | Chaperone DnaJ, C-terminal | Domain | |
IPR036869 | Chaperone J-domain superfamily | Homologous Superfamily | |
IPR008971 | HSP40/DnaJ peptide-binding | Homologous Superfamily | |
IPR036410 | Heat shock protein DnaJ, cysteine-rich domain superfamily | Homologous Superfamily |