5NIJ
Crystal structure of arabidopsis thaliana legumain isoform gamma in two-chain activation state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Legumain-like | 8061319 | 4006439 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Caspase-like | 8104082 | 3001096 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Caspase-like | 8104082 | 3001096 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Caspase-like | 8104082 | 3001096 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Caspase-like | 8104082 | 3001096 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF20985 | e5nijA2 | A: alpha arrays | X: Legumain prodomain (From Topology) | H: Legumain prodomain (From Topology) | T: Legumain prodomain | F: PF20985 | ECOD (1.6) |
A | PF01650 | e5nijA1 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: PF01650 | ECOD (1.6) |
B | PF20985 | e5nijB1 | A: alpha arrays | X: Legumain prodomain (From Topology) | H: Legumain prodomain (From Topology) | T: Legumain prodomain | F: PF20985 | ECOD (1.6) |
B | PF01650 | e5nijB2 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: PF01650 | ECOD (1.6) |
C | PF20985 | e5nijC1 | A: alpha arrays | X: Legumain prodomain (From Topology) | H: Legumain prodomain (From Topology) | T: Legumain prodomain | F: PF20985 | ECOD (1.6) |
C | PF01650 | e5nijC2 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: PF01650 | ECOD (1.6) |
D | PF20985 | e5nijD1 | A: alpha arrays | X: Legumain prodomain (From Topology) | H: Legumain prodomain (From Topology) | T: Legumain prodomain | F: PF20985 | ECOD (1.6) |
D | PF01650 | e5nijD2 | A: a/b three-layered sandwiches | X: Caspase-like (From Topology) | H: Caspase-like (From Topology) | T: Caspase-like | F: PF01650 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1460 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (utative) | |
B | 3.40.50.1460 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (utative) | |
C | 3.40.50.1460 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (utative) | |
D | 3.40.50.1460 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01650 | Peptidase C13 family (Peptidase_C13) | Peptidase C13 family | - | Family | |
PF20985 | Legumain, prodomain (Legum_prodom) | Legumain, prodomain | This domain is found in the proenzyme form of Vacuolar-processing enzyme (VPE), known as legumain. VPE is an asparagine-specific endopeptidase that plays important roles in many physiological processes, including the maturation of toll-like receptors ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
SCH | Parent Component: CYS :  AA0101 :  L-cysteine methyl disulfide MOD:00110 | |
SNN | Parent Component: ASN :  AA0101 , AA0302 , AA0593 :  L-cysteine methyl disulfide MOD:00110 , L-aspartimide MOD:00307 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asn) MOD:01940 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asp) MOD:01941 |