5MR3
Crystal structure of red abalone egg VERL repeat 2 with linker in complex with sperm lysin at 1.8 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5mr3a_ | All alpha proteins | Fertilization protein | Fertilization protein | Fertilization protein | automated matches | California red abalone (Haliotis rufescens ) [TaxId: 6454 ], | SCOPe (2.08) |
C | d5mr3c_ | All alpha proteins | Fertilization protein | Fertilization protein | Fertilization protein | automated matches | California red abalone (Haliotis rufescens ) [TaxId: 6454 ], | SCOPe (2.08) |
E | d5mr3e_ | All alpha proteins | Fertilization protein | Fertilization protein | Fertilization protein | automated matches | California red abalone (Haliotis rufescens ) [TaxId: 6454 ], | SCOPe (2.08) |
G | d5mr3g_ | All alpha proteins | Fertilization protein | Fertilization protein | Fertilization protein | automated matches | California red abalone (Haliotis rufescens ) [TaxId: 6454 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Fertilization protein | 8036754 | 3001337 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Fertilization protein | 8036754 | 3001337 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Fertilization protein | 8036754 | 3001337 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Fertilization protein | 8036754 | 3001337 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01303 | e5mr3A1 | A: alpha arrays | X: Fertilization protein (From Topology) | H: Fertilization protein (From Topology) | T: Fertilization protein | F: PF01303 | ECOD (1.6) |
C | PF01303 | e5mr3C1 | A: alpha arrays | X: Fertilization protein (From Topology) | H: Fertilization protein (From Topology) | T: Fertilization protein | F: PF01303 | ECOD (1.6) |
E | PF01303 | e5mr3E1 | A: alpha arrays | X: Fertilization protein (From Topology) | H: Fertilization protein (From Topology) | T: Fertilization protein | F: PF01303 | ECOD (1.6) |
G | PF01303 | e5mr3G1 | A: alpha arrays | X: Fertilization protein (From Topology) | H: Fertilization protein (From Topology) | T: Fertilization protein | F: PF01303 | ECOD (1.6) |
B | PF11386 | e5mr3B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF11386 | ECOD (1.6) |
D | PF11386 | e5mr3D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF11386 | ECOD (1.6) |
F | PF11386 | e5mr3F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF11386 | ECOD (1.6) |
H | PF11386 | e5mr3H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF11386 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.150.10 | Mainly Alpha | Up-down Bundle | Lysin | Fertilization protein | CATH (4.3.0) |
C | 1.20.150.10 | Mainly Alpha | Up-down Bundle | Lysin | Fertilization protein | CATH (4.3.0) |
E | 1.20.150.10 | Mainly Alpha | Up-down Bundle | Lysin | Fertilization protein | CATH (4.3.0) |
G | 1.20.150.10 | Mainly Alpha | Up-down Bundle | Lysin | Fertilization protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01303 | Egg lysin (Sperm-lysin) (Egg_lysin) | Egg lysin (Sperm-lysin) | Egg lysin creates a hole in the envelope of the egg thereby allowing the sperm to pass through the envelope and fuse with the egg. | Domain | |
PF11386 | Vitelline envelope receptor for lysin (VERL) | Vitelline envelope receptor for lysin | - | Family |